K21739

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21739

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21739

Determination of introduced cDNA(s)

  • J013074J04 - Rice Full-length cDNAs - Original: J013074J04

    full reading [+] show sequence

    Nucleotide sequence: J013074J04 - full reading
    GACTAGTGGT GGAGAGACGA AACACAGGAC GCCGAAATTC TCTCGCCCAC 
    GGATTCCCCT CCACTCGCAC TGTCAGTCTG TCACTCTCTC CGCCGCCGGC
    CGCCGAATCT CCGGCGCCGA TGGAGGCAGA CCCCAATCCG ATGGTGGTGC
    TGCACGCCTG CCTCGGCGTG GGCCACCTCA TCCCCATGGT TGAACTCGCG
    AAGCTCCTTC TCCGCCGCGG CCTCGCCGTC GTCATCGCCG TGCCGACCCC
    GCCGGCCTCC ACCGCCGACT TCTTCTCCTC GTCCGCCCCC GCGGTCGACC
    GCATGGCGGC CGCCAACCCT TCCATCTCCT TCCACCACCT CCCGCCGCCC
    GAGTACCCCG ACCCGGATCC CGACGCCTTC CTGCAGATGC TCGACACGAT
    GCGTCTCACC GTGCCACCCC TCCTCGCCTT CCTCCGCTCC CTCCCCTCGG
    TCGCGGCTCT CGTGCTCGAC CTGTTCTGCG TCGACGCACT CGACGCCGCC
    ACGGCGGCCG GCGTCCCGGC GTACTTCTAC TACACCTCCT CCGCCGGCGA
    CCTCGCCGCG TTCCTCCACC TCCCGCACCA CTTCGCCACC ACGGAAGGCA
    GCTTGAAGGA CATGGGTAAG ACGCCCCTCC GCTTTCCCGG CGTCCCTCCG
    ATCCCGGCCT CCGACATGCC GCACACCGTG CTCGACCGCG CGGACCGGAC
    CTGCGCTACG CGGCTGGGGC ACTACGGGCG GATCCCGGAG GCGCGGGGTA
    TTCTGATTAA CTCCTACGAA TGGCTGGAGG CGAGGTCCGT GAGGGCGCTC
    AGGGAAGGCG CCTGCATCCC CGACCGCCCC ACGCCGCCGG TGTACTGCAT
    CGGGCCGTTG ATGGCGAAAG GCGAGGAGGC GGCGAACGGG GAACGCCACG
    CATGCCTCTC GTGGCTGGAC GCGCAGCCGG AGAGGAGCGT CGTGTTCCTC
    TGCTTCGGCA GCTTGGGCGC CGTCTCGGTG AAGCAGCTGA AGGAGATCGC
    TCGTGGGCTC GAGAATTCCG GCCACCGTTT CCTCTGGGTG GTGCGTAGCC
    CGCCGCAGGA TCCGGCCAAG TTCTTCCTGC CGCGTCCGGA GCCTGACCTG
    GGAATGCTGC TCCCGGAGGG GTTCACGGAG AGGACGCGGG ACAGGGGAAT
    GGTGGTGACG TCGTGGGCGC CGCAGGTGGA GGTGCTCCGG CACGCCGCGA
    CCGCCGCGTT CGTGACGCAC TGCGGGTGGA ACTCCGTCCT GGAGGCGGCG
    TCGGCCGGAG TGCCGATGCT GTGCTGGCCG CAGTACGCCG AGCAGAGGAT
    GAACAAGGTG CTCTTGGTGG ATGGCATGCA GCTCGGAGTG GTGATGGACG
    GCTACGATGA GGAGCTGGTC AAGGCCGAGG AGGTGGAGAA GAAGGTGAGG
    TTGGTCATGG AGTTCGAGGA AGGGAAAAAA CTCAGGGATA GACTGACAAT
    GGCGAAGGAA ATGGCCGCGA AGGCGCTGGC AGACGGCGGG TCGTCGTCGT
    TGGCGTTCAC CGAATTTCTG AAGGATTTGA ACTTTGGAAA CACTACAAAG
    GAAAAAGCGT AGAAGACGAA CATTGAGCAG TGCAAACGAT CAAGCACAAA
    AGATGAACAT TGAGTTGGAA TGATTTATAT TGCTGCTGGA ATGTGACAAA
    ATCACATATC TGCATTATTT ACCCGCTGTG AACTGTGCTA TTTTTCTGTA
    TTTCTGATGT GAGCAGAAGG TGTGAGAGTT TCTTCAGGCT GATTAGCTGC
    TTCAGCAGTC AGCACTTGTA GATTACACTC TGGAGCCGTG CTTACATGAT
    GGAATAGTAT TATGCTCTAT C

    Gene models with high sequence identity

    1. AT3G16520.3 [+] show detail - UDP-glucosyl transferase 88A1
      E-value: 1e-86; Score: 318.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 0.0000000032
    FPrintScan PRICHEXTENSN 0.0000000032
    FPrintScan PRICHEXTENSN 0.0000000032
    FPrintScan PRICHEXTENSN 0.0000000032
    FPrintScan PRICHEXTENSN 0.0000000032
    PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
    HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 2.7e-27
    HMMPanther UDP-GLUCOSYLTRANSFERASE 2.8e-113
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 2.8e-113
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 3.4e-49
    Gene3D no description 0.00000000000026

    See the detailed result >

    AT3G16520.3

    Model type
    Protein coding
    Short Description
    UDP-glucosyl transferase 88A1
    Computational Description
    UDP-glucosyl transferase 88A1 (UGT88A1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7523 Blast hits to 7470 proteins in 455 species: Archae - 0; Bacteria - 255; Metazoa - 2062; Fungi - 26; Plants - 5000; Viruses - 120; Other Eukaryotes - 60 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR