K21744

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21744

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21744

Determination of introduced cDNA(s)

  • J023130E21 - Rice Full-length cDNAs - Original: J023130E21

    full reading [+] show sequence

    Nucleotide sequence: J023130E21 - full reading
    GTTAGAGCGA CACAAGCTAA GGTTGCTTAT ATTGGACCTC CAACTGACTT 
    CAACTATGAC CATGAGCATC TTGGCACTGG ACCACAAACC CTTGTTGAGA
    TTGCAGAGGG TCGGCATCCC TTCTGTTCAA CTCTGCAGTC TGCTAAGAAT
    CCTGTCATCA TTGCTGGGGC CGGGTTATTT GACCGGGAAG ACCAAGATGC
    CCTTTTCTCA ACGATAGAGA CTGTAGCCAA AAAATTCAAT GTGGTTAGAC
    CAGACTGGAA CGGGCTTAAT GTTCTATTGC TGCATGCTGC ACAAGCTGCA
    GCGCTTGATC TTGGTCTTGT TGCTAATCCT ACAGAGAGCA TCAAGTCCAC
    AAAGTTTCTG TATCTGATGG GAGCTGATGA TGTAGACTTG GACAAGGTTC
    CGGATGATGC ATTTGTTGTT TACCAGGGAC ACCATGGTGA CAAGGCTGTG
    TATAGGGCCA ATGTTATCCT GCCATCATCA GCATTCAGCG AGAAAGAAGG
    CACCTATGAG AACACCGAGG GATGCACTCA GTGGACAATC CCAGCTGTTC
    CTACTGTTGG TGATGCTAGG GATGACTGGA AGATCCTCCG TGCTCTCTCT
    GAGGTGGCTG GGGCTCAACT TCCTTATGAT AGCCTCTCAG GTGTGAGGGA
    CCGGATTAGC ATGGTAGCAC CAAACCTTGT GCATGTAGAT GAGAGGGAGC
    CGTGCACTAT TTCCTCTGAA GTGAAGCCTC CGGTAAAGCA ACAAGTGAGC
    TCTACTCCAT TCAAAACTGT TGTGGAGAAC TTCTATATGA CTGATGCAAT
    CACAAGAGCC TCAAAGATAA TGGCCCAATG CAGTGCAACC TTGTTGAAGA
    AGTGAAATCT ACACCTTTCG GAAGCTATTC ATCGGCAGAA AAGATTTTAG
    TTCCTTGTTT TTGCTCCAAA TTTCCCCAGT TGTTGCATGC TTGGTTGGAA
    ATTGGAGTAT AATTTGGACT GCCCTTAGAT TTGAAGAGCA GCAAAACTTG
    GTCTGTGAAT TTTTCTTGTG TATGAGAAGC AGAGCATACT CAATAAGCTT
    GTTGTCCTTC TGAATCATGC AACAGCCACA GGCAATAATT TTGTTCCTTT
    TTAGTTC

    Gene models with high sequence identity

    1. AT5G37510.2 [+] show detail - NADH-ubiquinone dehydrogenase, mitochondrial, putative
      E-value: 9e-106; Score: 380.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NADH-UBIQUINONE OXIDOREDUCTASE 9.5e-39
    HMMPanther NITRATE, FROMATE, IRON DEHYDROGENASE 9.5e-39
    Gene3D no description 3.2e-19
    HMMPfam Molybdopterin oxidoreductase 4.7e-37
    HMMPfam NADH-quinone oxidoreductase, chain G, C-terminal 0.0000000000000083
    superfamily Formate dehydrogenase/DMSO reductase, domains 4.8e-28

    See the detailed result >

    AT5G37510.2

    Model type
    Protein coding
    Short Description
    NADH-ubiquinone dehydrogenase, mitochondrial, putative
    Curator Summary
    Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte.
    Computational Description
    embryo defective 1467 (EMB1467); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to oxidative stress, photorespiration, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial membrane, chloroplast, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding (InterPro:IPR019574), NADH:ubiquinone oxidoreductase, subunit G (InterPro:IPR010228), Molybdopterin oxidoreductase (InterPro:IPR006656), Ferredoxin (InterPro:IPR001041), NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site (InterPro:IPR000283), NADH-quinone oxidoreductase, chain G, C-terminal (InterPro:IPR015405); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR