K21745

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21745

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21745

Determination of introduced cDNA(s)

  • J013035J03 - Rice Full-length cDNAs - Original: J013035J03

    full reading [+] show sequence

    Nucleotide sequence: J013035J03 - full reading 
    GTTACCAAAC CCCACCCAAC CTACAACGAC CACGACGACT CCTCTCCTCC 
    CTTTCTCTCT CTTCACCCGC AGCACGCGCG CCGCCGTCTC CGGCGATGGA 
    AGTTGCCGCC GGCGCCCGCG GCGGCGGGGC CGGCGGAGGA GGGGGAGGCC 
    CCGCGCCGTT CCTGCTCAAG ACGTACGAGA TGGTGGACGA CCCGTCGACG 
    GACGCGGTGG TGTCGTGGAG CGACGCCTCC GACGCGAGCT TCGTCGTCTG 
    GAACCACCCG GAGTTCGCCG CCCGCCTGCT GCCCGCCTAC TTCAAGCACA 
    GCAACTTCTC CAGTTTCATC CGCCAGCTCA ACACCTACGG ATTCCGTAAA 
    ATAGATCCAG AGCGATGGGA ATTTGCCAAT GAGTACTTCA TCAAGGGACA 
    AAAGCACCTG CTGAAGAATA TCCACAGGCG TAAGCCTATC CACAGCCACA 
    GCCATCCACC AGGTGCTCTG CCCGATAATG AGCGTGCAAT ATTTGAGGAT 
    GAGATCGAAC GGCTTTCACG AGAGAAATCC AACCTCCAGG CTGACCTCTG 
    GAAATCCAAG CAGCAGCAGT CGGGAACGAT GAACCAGATT GAAGATCTTG 
    AGCGACGAGT GCTTGGCATG GAGCAGCGAC AGACCAAGAT GATTGCCTTC 
    TTGCAGCAAG CTAGTAAGAA CCCTCAGTTT GTCAACAAGC TTGTTAAGAT 
    GGCAGAAGCA TCTTCGATTT TCACGGATGC TTTCAATAAG AAGAGAAGGT 
    TACCTGGTTT GGATTACAGT ATCGAGAACA CAGAAACCAC AAGCTTTTAT 
    GATGACCATA GCAGCACTTC TAAGCAAGAA ACAGGCAATC TTTTAAATCA 
    GCACTTCTCT GATAAGCTTA GGTTGGGACT TTGTCCTGCC ATGACAGAGA 
    GCAATATCAT CACGCTAAGC ACGCAAAGCT CAAACGAAGA TAACAGAAGC 
    CCTCATGGTA AACATCCAGA GTGTGACATG ATGGGGAGGG AATGTCTCCC 
    GTTGGTGCCG CAGATGATGG AACTCTCCGA TACCGGCACA TCTATCTGCC 
    CCTCCAAGAG CTCTTGCTTT GCACCACCTA TAAGTGATGA AGGCCTCTTA 
    ACATGCCATC TGAGTCTAAC TCTTGCATCA TGCTCGATGG ATGTTGACAA 
    AAGCCAAGGC CTCAATGCAA ATGGGACCAC TATAGACAAC CCAACTGAGG 
    CAGCAACAGC TACCATGGAA AAGGATGACA CCATTGACAG AAGCTTCGAT 
    GACAACCAAA AGAAATCAGC TGATTCTCGT ACAGCAGATG CCACAACACC 
    ACGAGCGGAT GCACGAGTAG CCAGTGAGGC TCCTGCAGCC CCGGCTGCAG 
    TGGTGAATGA CAAGTTCTGG GAGCAGTTCC TAACAGAGCG ACCTGGCTGC 
    TCTGAAACTG AAGAAGCAAG CTCTGGCCTA AGAACAGATA CTTCCAGGGA 
    GCAAATGGAG AACAGGCAGG CATATGATCA CTCACGGAAT GACAGAGAAG 
    ACGTGGAACA ACTGAAACTC TGAATTTACT ATAGAATTAT ACAATTTACA 
    AGAAGGGATA CAGGCGTACA GTGTAAGATG TTTAGAATCA GGAACCTGCT 
    GTTAAACATG ACAGATCAAT GGGTGTACAA CATCACACAG GTGTACATAT 
    TTTTTTTCCC TGAATGTTTC GGAGGGTTAA GATTAATAGT TCGATTAACC 
    ACACCAGTTG TTGC

    Gene models with high sequence identity

    1. AT4G13980.1 [+] show detail - winged-helix DNA-binding transcription factor family protein
      E-value: 5e-93; Score: 338.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Heat shock factor (HSF)-type, DNA-binding 0
    FPrintScan Heat shock factor (HSF)-type, DNA-binding 1e-18
    FPrintScan Heat shock factor (HSF)-type, DNA-binding 1e-18
    FPrintScan Heat shock factor (HSF)-type, DNA-binding 1e-18
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 5.4e-35
    HMMPfam Heat shock factor (HSF)-type, DNA-binding 3.6e-32
    HMMSmart Heat shock factor (HSF)-type, DNA-binding 4.3e-59
    Coil coiled-coil 0
    HMMPanther HEAT SHOCK TRANSCRIPTION FACTOR (HSF)-RELATED 3.9e-84
    HMMPanther HEAT SHOCK TRANSCRIPTION FACTOR 3.9e-84
    superfamily "Winged helix" DNA-binding domain 6.3e-37

    See the detailed result >

    AT4G13980.1

    Model type
    Protein coding
    Short Description
    winged-helix DNA-binding transcription factor family protein
    Curator Summary
    member of Heat Stress Transcription Factor (Hsf) family
    Computational Description
    AT-HSFA5; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 1 (TAIR:AT4G17750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR