K21802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21802

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21802

Determination of introduced cDNA(s)

  • J033084D13 - Rice Full-length cDNAs - Original: J033084D13

    full reading [+] show sequence

    Nucleotide sequence: J033084D13 - full reading 
    GACTTCGCGT TCCATCGCTC GCTCGCTCTC TCGCTTTGCT TCGAGCTGAG 
    AATGCACCTA AGGATGGCGT CGCCGCCGCA GCCCGGGCCG TACATGCCGG 
    ACCTGCCGGC GGTGCCGGCG TGGCTGAACA AGGGCGACAC CGCGTGGCAG 
    CTGGTGGCGG CGACGTTCGT CGGCATCCAG TCGATGCCTG GGCTGGTGGT 
    GATCTACGGC AGCATCGTGA AGAAGAAGTG GGCCGTCAAC TCCGCCTTCA 
    TGGCGCTGTA CGCCTACGCG TCCACGCTTA TCGTGTGGGT GCTCGTCGGC 
    TTCCGCATGG CGTTCGGCGA CCGGCTGCTC CCGTTCTGGG CCAAGGCCGG 
    GCCGGCGCTG ACGCAGGACT TCCTGGTGCA ACGCGCGGTG TTCCCGGCGA 
    CGGCGCACTA CGGCAGCGAC GGCACGCTCG AGACGCCGCG CACCGAGCCG 
    TTCTACGCGG AGGCGGCGCT GGTGCTGTTC GAGTTCGAGT TCGCGGCCAT 
    CACGCTGGTG CTGCTCGCCG GGTCGCTCCT GGGGCGGATG AACATCAAGG 
    CGTGGATGGC GTTCACCCCG CTCTGGCTCC TCTTCTCCTA CACCGTCGGC 
    GCGTTCAGCC TCTGGGGCGG CGGCTTCCTC TACCAGTGGG GCGTCATCGA 
    CTACTCCGGC GGATACGTCA TCCACCTCTC CTCCGGCGTC GCCGGCTTCA 
    CCGCCGCCTA CTGGGTGGGC CCGAGGCTGA AGAGCGACAG GGAGCGGTTC 
    TCGCCGAACA ACATCCTGCT CATGATCGCC GGCGGCGGGC TGCTGTGGTT 
    GGGCTGGGCC GGGTTCAACG GCGGCGCGCC GTACGCCCCC AACGTCACCG 
    CCACGGTCGC CGTGCTCAAC ACCAACGTCA GCGCGACGAG CCTCCTCACC 
    TGGACCTGCC TCGACGTCAT CTTCTTCGGC AAGCCCTCCG TCATCGGCGC 
    CGTGCAGGGT ATGATGACGG GGCTCGTCTG CATCACGCCC GGCGCCGGGC 
    TGGTGCACAC GTGGTCAGCG ATGCTGATGG GCATGTTCGC CGGCAGCGTC 
    CCGTGGTTCA CGATGATGAT CCTGCACAAG AAATCCACCT TCCTCATGAA 
    GGTCGACGAC ACCCTCGCCG TCTTCCACAC CCACGCCGTC GCCGGCATCC 
    TGGGCGGCGT CCTCACGGGC CTCCTCGCCA CGCCGGAGCT CTGCGCTCTC 
    GATTGCCCGA TCCCGAACAT GCGCGGCGTC TTCTACGGCA GCGGCATCGG 
    CCAGCTCGGG AAGCAGCTCG GCGGCGCGCT GTTCGTCACC GTCTGGAACC 
    TCATCGTCAC CAGCGCCATT CTCCTCTGCA TCGGCCTCTT CATCCCGCTC 
    CGCATGTCCG ACGACCAGCT CATGATCGGC GACGACGCGG CGCACGGGGA 
    GGAGGCCTAC GCTCTGTGGG GGGACGGTGA GAAGTTCGAC GTGACGCGGC 
    CGGAGACGAC GAGGACGGGA GGTGCAGGCG GCGCGGGCAG GGAGGACACC 
    ATGGAGCAGA GGCTGACCAA CATGGGAGCC AGGGGTGTCA CCATTCAGTT 
    GTAGAAGACG GGAAGGGTGT GCTTGCTCGT TCCAGTGATT CTGATGATGT 
    ATGGCACTGA TGTATGTTAC TTTCAACGTT TAGTGTTAAT TCGGTGATGT 
    AATGCTGGTG TAGTTTCTGT TATTGTTAAC TGAATTAGTT CATCGAAAAC 
    ATGAGAATTA TCTGGTT

    Gene models with high sequence identity

    1. AT2G38290.1 [+] show detail - ammonium transporter 2
      E-value: 5e-158; Score: 555.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ammonium transporter 1.9e-75
    PatternScan Ammonium transporter, conserved site 0
    HMMTigr Ammonium transporter 1.8e-128
    HMMPanther AMMONIUM TRANSPORTER 2 1.9e-284
    HMMPanther Ammonium transporter 1.9e-284
    FPrintScan Blood group Rhesus C/E/D polypeptide 2.1e-05
    FPrintScan Blood group Rhesus C/E/D polypeptide 2.1e-05
    FPrintScan Blood group Rhesus C/E/D polypeptide 2.1e-05
    FPrintScan Blood group Rhesus C/E/D polypeptide 2.1e-05
    FPrintScan Blood group Rhesus C/E/D polypeptide 2.1e-05
    superfamily Ammonium transporter 2e-91
    Coil coiled-coil 0

    See the detailed result >

    AT2G38290.1

    Model type
    Protein coding
    Short Description
    ammonium transporter 2
    Curator Summary
    encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.
    Computational Description
    ammonium transporter 2 (AMT2); FUNCTIONS IN: ammonium transmembrane transporter activity, high affinity secondary active ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E/D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;1 (TAIR:AT4G13510.1); Has 10296 Blast hits to 10279 proteins in 2052 species: Archae - 227; Bacteria - 4609; Metazoa - 555; Fungi - 427; Plants - 543; Viruses - 0; Other Eukaryotes - 3935 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR