K21810

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21810

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21810

Determination of introduced cDNA(s)

  • J023070C11 - Rice Full-length cDNAs - Original: J023070C11

    full reading [+] show sequence

    Nucleotide sequence: J023070C11 - full reading 
    GAGGGAAACT GGTGGACACA ATCAGGAGGC CATTCACAGC AGCTTCAACG 
    TTTCATCGAT CAGCAACAAG GCATCTCCAG CCACTGGCCA TGTTGGCTCA 
    GAGGAACGGC ATTAGCAGGA GGGGCCTTCT CACTTTCCTC ACCTCCACTG 
    CAGCCATACC TGAGGCTGGT GAATCAAGAA AGGCTCTACT GCAAGAGTAT 
    CTGAAGAAAT CAAAGGAAAA CAAAGAAAGG AACGACAAAG AGAGGCTAGA 
    CGACTACTAC AAGAGGAATT ACAGGGATTA CTTTGGTCTG ATCGAGGGCC 
    CTGCAAGACA GAAGAATGAA GATGAGCTTA CAGAGTCGGA GAAAGGAATT 
    CTCGAATGGC TTGACAAGAA CAAATAGTCA GAAGCTCAGG ATAATATGCA 
    TGCCTAAATT CTGGAAGGTT TTCTTACAGT TATTGCTTTA GTTATGCAGT 
    CTTGTGCTGC TTATCTGAGA GGCATGCTTT CTTGAAGGTC ATCCTTTGTA 
    GTGCCGGTAC TCTGGCAGTA ATGTTGTAAT TACAAGTGTG TTCATAGACA 
    AAGTATAAAA AATGCTGAAC GATCTCAAC

    Gene models with high sequence identity

    1. AT1G49975.1 [+] show detail - INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSE...
      E-value: 3e-21; Score: 98.20

     

    InterPro Scan Digest

    See the detailed result >

    AT1G49975.1

    Model type
    Protein coding
    Computational Description
    INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR