K21816

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21816

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21816

Determination of introduced cDNA(s)

  • J033076M24 - Rice Full-length cDNAs - Original: J033076M24

    full reading [+] show sequence

    Nucleotide sequence: J033076M24 - full reading 
    GAGTACTACT TGTTTCCATT ACCAAAATTC TGCGGCAACT TGTTTACAGC 
    TGAGTATCAG ATATTCAGAG TATAGGGAGT ACTTCTTGTC CCGAAGGCAG 
    CTGATGAGAA GGAAAACAGA GATGGTGCGG AGCACCTGCT GCGTGGTGCT 
    GCTCTTGCTC CTCAGCGTTG CTGCTCGATC GGCTTCGGCC ATCATGGACG 
    GCCTGCTGCC GAATGGCAAT TTCGAGGAGG CGCCGGACAA GTCGCAGCTG 
    AACGGCACGA GGGTGATCGG GCGCTACGCG ATACCGCAGT GGGAGATCTC 
    CGGGTTCGTG GAGTACATCG GGTCGGGCCA GATGCAGGGT GACATGCTCC 
    TGCCGGTGCC GGAGGGCGCG TACGCCGTGC GGCTGGGCAA CGAGGCCTCC 
    ATCCAGCAGC GGCTCACCCT GACGCGGGGA ATGCACTACT CCGTCACCTT 
    CAGCGCGGCG CGCACCTGCG CCCAGTCCGA GCTCCTCAAC ATCACGGTCA 
    CCCCGGAGAT CGGCGAGGTC CCCATCCAGA CCGTGTACAC CAGCAGCGGC 
    TGGGACTCCT ACTCCTGGGC GTTCAAGGCG AGACGCAGCG ACGTGTCGCT 
    CATCGTTCAC AACCCTGGCG TCACCGATGA CGCGGCCTGC GGCCCCCTCA 
    TCGACTCGTT CGCCATCAAG ACTCTGCAAT CTCCTCCAAG CACCAAAGAT 
    AACTTGCTGA AGAATGGGGG CTTCGAGGAA GGCCCGTACA TCTTCCCCAA 
    CACGTCGTGG GGCGTGCTTG TGCCGCCGAT GGACGAGGAC GACTACTCGC 
    CACTGTCGCC ATGGACGATC ATGGGATACA CCAAGTCCGT CAAGTACGTG 
    GACGCGGCGC ACTACGCCGT TCCAGGCGGC GCACGCGCGG TGGAGCTGGT 
    GGCCGGCATG GAGGCGGCGC TGGTGCAGGA GGTGTGCACC GTGCCCGGGC 
    GGTCGTACCG GCTGGAGTTC TCCGTCGGGG ACGCCGGCGA CGGGTGCGTG 
    GGGTCCATGT CCGTGCAGGC GTACGTGTCG CACGGCAGCG TGAAGGTGCC 
    GTACGAGTCG CAGGGCAGGG GTGGGTACAA GCGCGGGGTG CTCGAGTTCA 
    CGGCGACGGA CAAGCGGACG CGGGTGGTGT TCGTCAGCAT GGCCTACACC 
    ATGAAGCCCG ACGGCACGCT CTGTGGGCCC GTCGTCGACG ACGCGTCGGT 
    CGTCGGCGTC CACAGCCATC GCCGGCTTCT TCTGTAACAT AGGCTAACGT 
    CAACGTGGCA TTCATTTTGT ACTGCGCCTC TCCGGTTCGT CGGAAATTAT 
    GTATAGTTCG ATGATACACA TATCATTGAA TTGAGTTTCC TGCACCGGAT 
    TTTCTCAGTA GGAAGACGAA CGGATTTGAG ATTCAGATGT AGTCCTTCGC 
    CTGTCGAGGG TTAACTCAGA CATCTGAGCA CCAGAAAATG TTTTCGCCTG 
    TGCTAGATTT CATTACAAAT TAGAAGCTGG ATGAATGCAT TAGTTTTAGT 
    AGAGTGCTAC TGAAAATACA CTATGTTACA CCAAGATGCA TTGTTTTAAC 
    ATTGTACTGC TATACTCCAT TTCAGTAGTA GAAAAAATAT TGTACTTCT

    Gene models with high sequence identity

    1. AT5G11420.1 [+] show detail - Protein of unknown function, DUF642
      E-value: 2e-116; Score: 416.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Galactose-binding domain-like 0.000004
    superfamily Galactose-binding domain-like 0.000075
    HMMPfam Protein of unknown function DUF642 1.2e-151

    See the detailed result >

    AT5G11420.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF642
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G25460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR