K21818

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21818

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21818

Determination of introduced cDNA(s)

  • J023102I11 - Rice Full-length cDNAs - Original: J023102I11

    full reading [+] show sequence

    Nucleotide sequence: J023102I11 - full reading 
    GGGAGAGCAA TTCTGCGAGA CGATGAGGGC TCAACGACCA TCGTTGGCAG 
    CTGCTGGCAA TCCGGTACTT GCTCTTCTGT TTCTATGGGT TCTTAGCTGG 
    GGACATGTAA CGGCGGAAAT TGATATCGCC AACATGACGG CGCTACAGAA 
    ACATGTTTCG TTCTTCGACC GGAACAAGGA TGGCATTATT ACTCCGTCGG 
    AGACCATTGA AGGGGTTGTT GCAATCGGTT GTGACTTCGC ATTTGCTAGA 
    GACCTTGCCG CCAGTGTGCA TGCTGGTCTT GGTCCTAAAA CAAGCCCCAA 
    GGATGCACCA TTACCTCACT TATCGATATA CATAAACAAC ATCTATAGAG 
    GAATGCACAG GAGTGACACA GGTGCACTAG ATGCTAAAGG AAGGTTTGTT 
    CCTGCAAAGT TTGAGGAAAT ATTCTCGAAA CACGCAAAAA AATAGACCAG 
    ATGCATTGAC ATCCTTGGAG GTCAAAGAGA TGATTCTAGC AAATCGAGAT 
    CCAAATGACC CACAATCATG GGGTGCAGCT ATAAAGGAGT GGGGGCTAAT 
    TTATGGTCTT GCGAGTGATA AGAACGGATA TTTTCACAAG GATAGTGTGA 
    GAGGTATATA CGATGGTAGT GTGTTCGTCA AGTTGGAGAA AGAGAGGGAA 
    TCTTCACAAA GTACAGTTTG CCGGAGCTTA TCATTTCGGA GTTCTGTATA 
    AAGTAATTGG GAAATGAAGT TATAATCACA AATACATTGT ATTGCATCAT 
    AGGTATTGTT CGTGTACATG CAAAATGCCA TATTTGGAGA AGCACTGGTA 
    TGGTAGTAGA GTTATGGTTG CATGACTTTA ATCGTTATGA TTCAAATCTC 
    GATTTATATG AACATTATGT ATACATGGGT GCACTCTTAA TAAGATTTGA 
    GAAAACTAAT TTT

    Gene models with high sequence identity

    1. AT5G29560.1 [+] show detail - caleosin-related family protein
      E-value: 3e-27; Score: 47.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Caleosin related 1.3e-38
    HMMPfam Caleosin related 1.2e-21
    ProfileScan EF-HAND 2 9.632

    See the detailed result >

    AT5G29560.1

    Model type
    Protein coding
    Short Description
    caleosin-related family protein
    Computational Description
    caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR