K21821

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21821

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21821

Determination of introduced cDNA(s)

  • J013072N24 - Rice Full-length cDNAs - Original: J013072N24

    full reading [+] show sequence

    Nucleotide sequence: J013072N24 - full reading 
    GATCAGTCCC ACCTGTCTCT CGCCGCCGCC GCAGCACAAG CGCATTCAGA 
    TCTCGGTCGC TTGGTTTTCC TTCTTGATTT CCTCTCCGAG TGGTAATTGC 
    TTCCGTGTTT TTCTCTCTTT TTTTTTTCTC GTTGAACGAT TGATTTGCTT 
    TTGCTTCCAT TTTGTTTGTT TGAAGATTTC AATTCATCGC ATCGTTGATA 
    TAGTTTTTGA ATCGTGTTTG GGATGCAAAT GATTTGGTGG TGAGAATAAT 
    AGGGCTCTAT ATTATGAGTC AACAGCAGGC GCCGTTTCAA TGGTGCCCTG 
    TCTGCCGCTT GGAGCCCAGA TCGATGCCTA AGCCAGGAGA AGATTGTTTG 
    GAGATCCATC TTCTTTAGTT CCAAGCCACA ATACCTGGCC ACAAACCCAA 
    ATCATCCCCC AATCGAAAAC ATCGCCTTCT TTTCTTCAGT TCTTGCTGTT 
    TTTTTGTATG GTGATTTGTA TGTTTTGGAC GGCTCTCAGA CGAACGGGTG 
    CTCTGCCGAT CTATTCCATG GGCGAGCCAC CCTTTGCAGA AGTGCCGAGA 
    GAGACGCAGG CCGCTAACAC GATTGGGTGT TTCCTTTCTA GATCCATCCA 
    AATTTCAAGC GGAAATATTG TATCTGTATC CCATAGATCT GTCCGGTTTT 
    TCATTAATTC GCTCGCTTTG GTGTTTCAAT CGATTGCTTG TTTTTGCTGT 
    CAGTCACTGC GGATCGAAAA AACTTGTGCA ACTGAGGGAC TAATCTAGGC 
    GGATGATTTC TGTAAAACTC TAATGGACAA TGGGTACTCC ATATAAAATA 
    TGCCCATCTT AAAAATATTT CTTGTTGATC GGATGGACAC TTAGGGAGTT 
    AGGGTGCGTT CGTTCCATGG ACAATGATGA GTGAGATAGC ACATCGATGC 
    GTTTTTTGCA ATTTTTTTTT AAAAAATCAT ATTAATCTAT TTTTACACTT 
    TAAAGTAGTT AATACTTAAT TAATCATATT CTAATAGCTT ATCTTTTTTT 
    TGCATATCTT TCCAATCTTC TCGATATTCG AACTCACCCT TAGCATGGAC 
    GAGTACTGTA CACGGCTCCA TAGTTCATCA AGCGAATGAA ACAATTCTTT 
    ATTCTCGCGT TAAACCATTA TTAAAGTTCA AACTTGAAAT CTGTAAGTTC 
    GTTAAAAAAA CTGAAATCTC TAAGCGTTAA CCCTATTTTC TATTTTCGTA 
    ATAGTAGTAA CTAAAGCAAG GCATTGTTTA GATCGTCTTT CACCTGCCAT 
    TGTCTGTTGA TTTGAGGTTG TCCTGCCACT TTTCTGTGTC AACATTACTC 
    GGATCATTCT ACGGTTTCAT TTGTGGATTT GAGATTATCA GAGATCGACA 
    CAAGAGAAGA ATCCACTGAA TTCCAAAGAC GAGTAAGGTG CAACTTTTTG 
    CAGTAAAACA CATCAGGCAC AACAGACCAC AGTTCCAGAA CAGCAGTTGA 
    CAGATACAAA ACAACTGAAG GTAAATCAAC AGTAAAATGA GCGAAACACC 
    AAAGCTAACG GAACGTTTAT TCACACAATG GTGTTCTTAT CTGATAAGGG 
    GACCAAACTG TCATGACAGT GCGGTAACTT CAGTTATCTT AACACAAACA 
    GCAGACAGCA TGAGAGCAAC ACAACATCAT AAAGTTCTTA TCAGACATGT 
    GTCATAGTAA CCCAACATAA TCACACAATG GACAACCTTT CAGCTCACCA 
    CACCATAATG ATACATTATG GGAGTAGCAT TTTATATGTA CATGTCTAGA 
    AGTTCATCCT ACAAAGGGGG GCAGCAGAAG AAGAAATAGA CAAGATGAAA 
    ATGAGAAATG GTGTTCGCCA TTGGACGTGA TGAGATGAAC CAAGTCGGCG 
    TATGATACAC CTCTTTCTTT AGATCGGCGG GATGTTCGAA AACGAGAAGC 
    CCTTGTACCC TTTGTAAGCA TAGTAGGCAA TTCTTGTGTA GTAGAACCCA 
    GGGATGAACA TCACAATACC CAGAATCATG

    Gene models with high sequence identity

    1. AT4G29850.1 [+] show detail - Eukaryotic protein of unknown function (DUF872)
      E-value: 0.0000000002; Score: 65.10

     

    InterPro Scan Digest

    See the detailed result >

    AT4G29850.1

    Model type
    Protein coding
    Short Description
    Eukaryotic protein of unknown function (DUF872)
    Computational Description
    Eukaryotic protein of unknown function (DUF872); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0414, transmembrane (InterPro:IPR008590); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF872) (TAIR:AT2G19350.1); Has 271 Blast hits to 271 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR