K21821

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21821

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21821

Determination of introduced cDNA(s)

  • J013072N24 - Rice Full-length cDNAs - Original: J013072N24

    full reading [+] show sequence

    Nucleotide sequence: J013072N24 - full reading
    GATCAGTCCC ACCTGTCTCT CGCCGCCGCC GCAGCACAAG CGCATTCAGA 
    TCTCGGTCGC TTGGTTTTCC TTCTTGATTT CCTCTCCGAG TGGTAATTGC
    TTCCGTGTTT TTCTCTCTTT TTTTTTTCTC GTTGAACGAT TGATTTGCTT
    TTGCTTCCAT TTTGTTTGTT TGAAGATTTC AATTCATCGC ATCGTTGATA
    TAGTTTTTGA ATCGTGTTTG GGATGCAAAT GATTTGGTGG TGAGAATAAT
    AGGGCTCTAT ATTATGAGTC AACAGCAGGC GCCGTTTCAA TGGTGCCCTG
    TCTGCCGCTT GGAGCCCAGA TCGATGCCTA AGCCAGGAGA AGATTGTTTG
    GAGATCCATC TTCTTTAGTT CCAAGCCACA ATACCTGGCC ACAAACCCAA
    ATCATCCCCC AATCGAAAAC ATCGCCTTCT TTTCTTCAGT TCTTGCTGTT
    TTTTTGTATG GTGATTTGTA TGTTTTGGAC GGCTCTCAGA CGAACGGGTG
    CTCTGCCGAT CTATTCCATG GGCGAGCCAC CCTTTGCAGA AGTGCCGAGA
    GAGACGCAGG CCGCTAACAC GATTGGGTGT TTCCTTTCTA GATCCATCCA
    AATTTCAAGC GGAAATATTG TATCTGTATC CCATAGATCT GTCCGGTTTT
    TCATTAATTC GCTCGCTTTG GTGTTTCAAT CGATTGCTTG TTTTTGCTGT
    CAGTCACTGC GGATCGAAAA AACTTGTGCA ACTGAGGGAC TAATCTAGGC
    GGATGATTTC TGTAAAACTC TAATGGACAA TGGGTACTCC ATATAAAATA
    TGCCCATCTT AAAAATATTT CTTGTTGATC GGATGGACAC TTAGGGAGTT
    AGGGTGCGTT CGTTCCATGG ACAATGATGA GTGAGATAGC ACATCGATGC
    GTTTTTTGCA ATTTTTTTTT AAAAAATCAT ATTAATCTAT TTTTACACTT
    TAAAGTAGTT AATACTTAAT TAATCATATT CTAATAGCTT ATCTTTTTTT
    TGCATATCTT TCCAATCTTC TCGATATTCG AACTCACCCT TAGCATGGAC
    GAGTACTGTA CACGGCTCCA TAGTTCATCA AGCGAATGAA ACAATTCTTT
    ATTCTCGCGT TAAACCATTA TTAAAGTTCA AACTTGAAAT CTGTAAGTTC
    GTTAAAAAAA CTGAAATCTC TAAGCGTTAA CCCTATTTTC TATTTTCGTA
    ATAGTAGTAA CTAAAGCAAG GCATTGTTTA GATCGTCTTT CACCTGCCAT
    TGTCTGTTGA TTTGAGGTTG TCCTGCCACT TTTCTGTGTC AACATTACTC
    GGATCATTCT ACGGTTTCAT TTGTGGATTT GAGATTATCA GAGATCGACA
    CAAGAGAAGA ATCCACTGAA TTCCAAAGAC GAGTAAGGTG CAACTTTTTG
    CAGTAAAACA CATCAGGCAC AACAGACCAC AGTTCCAGAA CAGCAGTTGA
    CAGATACAAA ACAACTGAAG GTAAATCAAC AGTAAAATGA GCGAAACACC
    AAAGCTAACG GAACGTTTAT TCACACAATG GTGTTCTTAT CTGATAAGGG
    GACCAAACTG TCATGACAGT GCGGTAACTT CAGTTATCTT AACACAAACA
    GCAGACAGCA TGAGAGCAAC ACAACATCAT AAAGTTCTTA TCAGACATGT
    GTCATAGTAA CCCAACATAA TCACACAATG GACAACCTTT CAGCTCACCA
    CACCATAATG ATACATTATG GGAGTAGCAT TTTATATGTA CATGTCTAGA
    AGTTCATCCT ACAAAGGGGG GCAGCAGAAG AAGAAATAGA CAAGATGAAA
    ATGAGAAATG GTGTTCGCCA TTGGACGTGA TGAGATGAAC CAAGTCGGCG
    TATGATACAC CTCTTTCTTT AGATCGGCGG GATGTTCGAA AACGAGAAGC
    CCTTGTACCC TTTGTAAGCA TAGTAGGCAA TTCTTGTGTA GTAGAACCCA
    GGGATGAACA TCACAATACC CAGAATCATG

    Gene models with high sequence identity

    1. AT4G29850.1 [+] show detail - Eukaryotic protein of unknown function (DUF872)
      E-value: 2e-10; Score: 65.10

     

    InterPro Scan Digest

    See the detailed result >

    AT4G29850.1

    Model type
    Protein coding
    Short Description
    Eukaryotic protein of unknown function (DUF872)
    Computational Description
    Eukaryotic protein of unknown function (DUF872); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0414, transmembrane (InterPro:IPR008590); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF872) (TAIR:AT2G19350.1); Has 271 Blast hits to 271 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR