K21823

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21823

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21823

Determination of introduced cDNA(s)

  • J023106H08 - Rice Full-length cDNAs - Original: J023106H08

    full reading [+] show sequence

    Nucleotide sequence: J023106H08 - full reading 
    GGTTTTCATG ATGGCAAGTG CATGGAACTA AGTTGGGGCC CTTAGGCTTT 
    GTGGTGAAAA GTTTCACCCA AAAATGCTAG TACTGGGGCT GCACATTCTG 
    TGCAACAGCC TGACATATGA ATGATTATAT GCTCTGCCCT GACCCAAACT 
    GGTTCCTTAA AAATCTGCAG ACTGGGTGTT TTGTCCTTCA CATCTATACA 
    TGCAGAATGC CTCGAGGGCG AGGCTCTTCT GTCACAACCC ATGAGAAACC 
    CAAAGTTGAT GAAGCAGTCA GTACAAATGA AGATTATGGC AGGCGCAGGA 
    GGACACCTTT TTTATTGCTG GGATTGTTGA TGGTCTTCCT TCATGGATCC 
    TGGTCTGTTT ATCGTTTTCA GTTTGCAAAT CTTCCTTTGC CCCTTGATGC 
    TGAACAGGCT GGCAAGCGTG GGTTCTCAGA GGCATCTGCT CTGGAGCATG 
    TTAAGTACTT TGCAGCCTTG GGTCCTCATC CAGTTGGTTC AGATTCCATC 
    GATCTTGCTG TTCAGTATGT ATATGCAGTA GCAGATAAAA TAAAGAAGAC 
    AGCTCATTGG GATGTTGATG TCCAACTGGA GCTGTTCCAC ACAGATATTG 
    GTGCAAATCG TATGGCTGGT GGCCTTTTCA ATGGAAAAAC TATGCTGTAT 
    TCAAACCTTA AGCATGTGAT ACTGAGAGTT GTTCCCAAGT ATTTACCAGA 
    AGCCGAGGAC AATTTGATTC TTGTTTCTTC TCATATCGAT ACAGTTTCCA 
    CGACCGAAGG TGCTGGAGAT TGTAGTTCAT GTGTGGGAGT CATGTTAGAG 
    CTTGCACGAG GAGTGGCTCA GTGGGCTCAT GGGTTTAAGA GTGGTGTCCT 
    GTTTCTATTC AACACAGGGG AAGAAGAAGG TCTTGATGGT GCCCATAGTT 
    TTATAACTCA GCACCGCTGG AGAAATTCAG TACGTTTTGC AATCGATTTG 
    GAAGCTATGG GTATCAGCGG GAAATCTACT CTCTTCCAGG GTACAGATCA 
    TTGGGCTCTG GAAAGCTTTG CTTCTGTAGC CAAATATCCA TCTGCTCAGA 
    TAGCTTCACA GGACGTTTTT CAGTCTGGAG CAATAAAATC TGCTACTGAT 
    TTTCAAATAT ATCAGGAAGT TGGTGGTCTT CCTGGTCTTG ATTTTGCTTA 
    TACAGATAGG ACATCAGTCT ATCACACGAA GAATGACAAA ATGAAGCATC 
    TGAAACCAGG ATCCCTTCAG CATATTGGAG AAAATATGCT TGCTTTCCTA 
    CTTCATGCTG CCGCATCACC AAAATTTATG AAAGATGCAA TACAAGCAAA 
    GCAAGAGGGT GCAGAGAAGA CCAAAGCTGT TTTTTTCGAC ATTCTGGGCA 
    AGTACATGGT AGTATATCCA CAGCGACTTA CAACCATGTT TCACAACTCA 
    ATAATATTTC AGTCCCTTCT TATCTGGGGA ACTTCATTGC TTATGGGTGG 
    ACGGCCTGGC CTTGTGTCCT TTGGAATATC ATGTTTGGGC ATTGGATTTG 
    CCCCTATATT TCCAGACATC TGTTATCACT TAACCCATTA CAAGCCCGCT 
    GCCGCAGATA TTCCCGTGGC GAGCGATAAC CCAGCGCACT ATGCGGATGC 
    CATTCGTTAT AATGCTCGAA CGCCTCTGCA AGGTTCTTTG CTGCCGTTAA 
    CCCGTCTGGT TTGGGCATGA TACTGATGTA GTCACGCTTT ATCGTTTTCA 
    CGAAGCTCTC TGCTATTCCG TTACTCTCCG GACTCCGCAC CGCCGTGTTC 
    TTCGGTTCAA GTCCCAACAT CCGGGCGAAC TGGCGTGTTT CATTAGCCCG 
    GTAGCATGAA CCATTATCCG TCAGCCACTC CACTGGAGAC GACGGAAGAT 
    CGTTGCCGAA GCGGCGTTCC ACCGCTCCCA GCATGACGTC CTGTACTGTT 
    TCACTGTTGA AGCCGCCGGT AGTGACCGCC CAGTGCAGTG CCTCACGATC 
    ACAGCAGTCC AGCGCGAACG TGACACGCAG TCTCTCTCCG TTATCACAGC 
    AGAACTCGAA CCCGTCAGAG CACCATCGCT GATTGCTTTC TTTCACGGCC 
    ACTCTGCCTG TATGTGCCCG TTTCGATGGC GGTACAGCAG GTTTTCGCTC 
    AAGCAACAGC GCATTCTGGC GCATGATCCG GTAAACACGT TTGGCATTGA 
    TCGCAGGCAT ACCATCAAGT TCTGCCTGTC TGCGAAGCAG CGCCCATACC 
    CGACGATAAC CATACGTTGG CAGCTCTCCG ATAACATGGT GTATACGGAG 
    AAGCACATCC GTATCATCAG TGTGACGACT GCGGCGGCCA TCCATCCAGT 
    CATCGGTTCG TCTGAGAATG ACGTGCAACT GCGCACGCGA CACCCGGAGA 
    CAACGGCTGA CTAAGCTTAC TCCCCATCCC CGGGCAATAA GGGCGCGTGC 
    GCTATCCACT TTTTTGCCCG TCCATATTCA ACGGCTTCTT TGAGGAGTTC 
    ATTTTCCATC GTTTTCTTGC CGAGCAGGCG CTGGAGTTCT TTAATCTGCT 
    TCATGGCGGC AGCAAGTTCA GAGGCAGGAA CAACCTGTTC TCCGGCGGCG 
    ACAGCAGTAA GACTTCCTTC CTGGTATTGC TTACGCCAGA GAAATAACTG 
    GCTGGCTGCT ACACCATGTT GCCGGGCAAC GAGGGAGACC GTCATCCCCG 
    GTTCAAAGCT CTGCTGAACA ATTGCGATCT TTTCCTGTGT GGTACGCCGT 
    CTGCGTTTCT CCGGCCCTAA GACATCAATC ATCTGTTCTC CAATGACTAG 
    TCTAAAAACT AGTATTAAGA CTATCACTTA TTTAAGTGAT ATTGGTTGTC 
    TGGAGATTCA GGGGGCCAGT CTAGGCATTG TTCTTATGTT AATTTCTTCT 
    GTTACCTTAT CAGTTGTGGT TGCAATTGCT CTGCCACATA TTTGTTCCTT 
    TCCTGTGACA TTTGTTGCGC ACCCATGGTT AGTAGTTGGG TTATTTGGTT 
    CACCTGCACT ACTTGGGGCA TTCATCGGTC AACATATTGG ATTCATTATT 
    TTGAAAAGGC ATCTTAAACA TGTATATTCT ATAACAAAGT CAGGACTAGC 
    TCATAACATG CTGGAACAAA TTGTTAACCT GGAAGCTGAG AGGTGGATTT 
    TTAAATCTGG TTTTGTACAA TGGCTAATAG TTCTGATACT GGGAACATAC 
    TTGAAGGTTG GATCATCTTA CATAGCACTC ATCTGGCTTG TTTCGCCTGC 
    TTTTGCATAC GGTCTTATGG AAGCAACACT ATCTCCTGCT CGGTCACCTA 
    AACAGCTCAA GGTTATTACA TTGGTTCTGG CATTGGCTGC ACCAGTTGTC 
    TCATCTGCTG GTTTAGTTAT TCGCATGGTT GATGTTATAA TTGGGAGTAT 
    TGTACGCATT GATAGGAACC CTGGTGGCCT ACCAGATTGG CTTGGCAATG 
    TAGTAGTCTC TGTTGCCATT GCTATTGTCA TATGTTTTAC CTTTGTGTAT 
    CTTCTTTCTT ACGTTCATAT ATCAGGTGCT AAAAGGACTC TTGGTTTTCT 
    GTTATGTATA TTCTTTGGTC TTGCACTTGC ACTGGTGTCA AGTGGCATTC 
    TCCCTGCATT CACGGAGGAT ATTGCTCGGT CTGTAAATGT TGTGCATGTT 
    GTTGACACTA CAACGGTGAA TAGTGGTAAT ACAGAACCAT CATCATATGT 
    TACTCTGTTC TCCAATACAC CTGGAAAGTT GACAAAGGAA TTAGTAGACC 
    TTAGAGATGA AGAATTTTCT TGTGGGAGGA ATAGGGCTAT TGATTTTGTT 
    ACATTTACCA TGAAATATGG CTGTTTGAGT TACGAAGGGA CCAATACTGG 
    ATGGAGCAAA TCAGAAGTGC CAGTGCTCAG TTTGAAAAGT GATTCTGTTA 
    CCAATGATGC TCGACAAACA ATAATATCAG TTGATACTAA GTCATCTACG 
    CGTTGGTCAC TGGCAATCAA TAAACAAGAA ATTGATGACT TCACAGTTCA 
    TGTGGATTCG GAGAACTTGG TTCCACTGGG TAATAAGAGC GAGATCGATG 
    GGTGGCATAC AATCCAGTTT GCTGGTGGTA AGGACTCACC AACAAAATTT 
    CAGCTAACCC TTTTCTGGGC AAGTAATTCC AAGGATGCAT TCCCAAAGCA 
    AGTCGAATCA GAAGATCATT CTTTCTTACT AAAACTAAGA ACGGATGTGA 
    ATAGAGTTAC ACCGAAGGTT GGCAGGGTTC TCGAGAAGCT TCCAGGATGG 
    TGTGCACCCT TTGGCAAGTC TACTTCTCCT TATACATTGG CTTTCTTGAC 
    CGCTCTTCCT GTCAATATTT AGCCATACTT ATTCTTTACC AGACTTAGGG 
    TATTCGTAGT GTTTACTTTT TCTAATTTAG ATATGCATAT CCGATCACAC 
    CACCACATAG TTTACACTTA TAGCCAACAA ATGTACACGA AAATTGCCAG 
    CAACTTCCGT TTAACAGAAT CATGTGATAG GGGCCTCAAA CATACAGGAT 
    AGCCACGGGT TCAAATATGT TTCTTACGAA CGAGCAGTTT CATAGTTTCA 
    TGTGAAAATG CTGAGATGTA ATAATGGCTG TAATAAAGAC TGATGCTTTG 
    ATTCCTCAAA AAAGGATTGG TGGTTTTGTA TGTACTCGTG GTCATGGAGA 
    AATCGAAGGC ATTACCAGAT TTTAG

    Gene models with high sequence identity

    1. AT5G20660.1 [+] show detail - Zn-dependent exopeptidases superfamily protein
      E-value: 8e-139; Score: 492.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther FXNA-RELATED 9.5e-74
    Gene3D no description 5.9e-31
    Gene3D no description 0.00000000017
    HMMPfam Peptidase M28 4.9e-37
    HMMPfam Integrase, catalytic core 1.1e-22
    HMMPfam Transposase IS3/IS911 7e-19
    Coil coiled-coil 0
    superfamily Zn-dependent exopeptidases 3.6e-40
    superfamily Polynucleotidyl transferase, ribonuclease H fold 8.1e-31
    ProfileScan Integrase, catalytic core 14.939

    See the detailed result >

    AT5G20660.1

    Model type
    Protein coding
    Short Description
    Zn-dependent exopeptidases superfamily protein
    Computational Description
    Zn-dependent exopeptidases superfamily protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: Zn-dependent exopeptidases superfamily protein (TAIR:AT1G67420.2); Has 1349 Blast hits to 1339 proteins in 371 species: Archae - 7; Bacteria - 487; Metazoa - 434; Fungi - 254; Plants - 72; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR