K21824

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21824

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21824

Determination of introduced cDNA(s)

  • J013135P13 - Rice Full-length cDNAs - Original: J013135P13

    full reading [+] show sequence

    Nucleotide sequence: J013135P13 - full reading 
    GACTCACCCT GCCATGGACG GGTAGAAAGG TACAGTGGCG GCGCCGACAC 
    GCGGTGGAGG AGGAGGCGGC GGCGGCGGCG GCGATGGGGC TGCTGTCGAA 
    CAGGGTGGAG CGGTCGGAGA TCAGGCCGGG GGATCACATC TACACATGGA 
    GGGCGGTGTA CGCCTACTCC CACCACGGTA CGCGCGCGCC CACCCCCTCC 
    ATCCTCTTCC TCCTCGGATG CCATCCCGGT TGCTTGAATT GTTGTCGCCA 
    CTCGCCAATG GTGGCGGCGG CGGCGGTTGC GGGTTTAGGT TTGGGAACTA 
    ATCCGGCGGC GGCTCTGTGG CTCTCCTCCT CCGGCGCTGC TTCGAATTTT 
    CTCGTGCGAT TGACGTCTGA TCAATGGTTG TTGACTTGAC CGGGAAATTC 
    TGGCTCGGCG AGTCAACGGG GGATTTTTTT CCCCCTTTTT TTTGGTCTGT 
    GCGGCTACTG GATCGGAAAT TTCACTGCGA TTGCTGGGTC AGGAACAAAT 
    GCGATCGAAA TTGCCTAGTT GGACTGGAAA TTTTGTTCGG CCGGCTCAAT 
    GGGGGGAACA TTTGCGATCT GAATTTTCGA GTTGGGGTTG TCTCTTGCTT 
    AGTTCATCGG TAACTGAAGG GCGTGTCTTC GTCTCAGTTT TCCATTCTGT 
    CGGATTTGGG ATTTCTTTCG CCTCATACTT CCTGCGTGAT GTTCTCTTCT 
    CGAGCAAACC CCTCTGCTTG AAGTACGGAT CACGTGGTTG GTTGGACAAG 
    TGCGTCAATC ATCCAACTCT CTGATTGAGT GATTGTTCAG ACTTTTAACT 
    GTTTACAGAT TCGTAGTAGA ACTCAGCAGT AACACGCAAA TCATCGTGCA 
    TTTGTACTAT CTTCAGTTCA TAATTAATTC TGTAGGTGTA GAGTTGACAA 
    CATTAGTATG GTAGAATGAT GGCTGTAAAA TAGTGGCAAA ATGGGTACAT 
    GCATGAAAAA GATCGATTCA ATGTTTCTAC TTCTCTGTGT GGGTTATGCG 
    TAGAATTGAG GGTTCAACTG AATTGCCCAA ACTCTATCCG GAAATCCTTC 
    CAGATGGATC TGACGCCACA TGCTGTGTTT GTTGCTTCCC ATGTAGAACA 
    AATGGCACTT GTTGCTGCTC ACCTACTGCT GACCAACTTG TCTGTTTGTA 
    TCTGTGCTTT TTTTATCTCC GTGTGGAAAT TAGCCTCTTG TTTTTTTATA 
    GGAATCCCTC TTGTTAATTC AAGGTTGCTC GCAATAAAAT AAGTACTGTA 
    AGGTTGGTTC TATAATGTAC TGAACCTGAC AAATGACTTG TTTAGTACAC 
    TATTGTACTA TTAGTGATTC AGTAGCTGAA AACTCAAGTC ACCATAGTAT 
    CCTATGATAA GTTGATAACT ACTTTGATTA ACAGTTGATG TCAAACTTAT 
    CTACGTGGCT ACGTTCATTT TTTATCCTTA CCTTCAGGTG TATTTACCAC 
    AGTAATTTTG CTATGCATCT TTGTTCTTTT ACAGCAGAGG TCTTTCATCT 
    CCATTCAGTT CAGGTGTATT TACCATGGGT ATTTTGCAAT GCATCTCTTT 
    TCTTTTACAG TAGAGGTCTT TCATCTCCAT TCAGGAAGCG TAAAGGACAC 
    TTCTGCTCTG TGTTGCTATG CACTCTGTAG TTCTCCTAAA TGGACAGTAT 
    GTCCCCTCAA GTGCATTTTA TTGGCGGATG TAGAGCTCCT TTTATTGTAG 
    TGGTCCTGTG TGGACATTTG ATCAGGGCCA CATCTAGGGA GGACATGCTG 
    TGGGTTTTGC TGTTTTTGCA CATGACAGCC TGGATGAAAG GGCTGCAATA 
    TACAAGAAAA ACTGTCTTGT CTGCATTCAA CTCCTTAAAA CACTATTTTC 
    ACCATCAAGG TGCATTTTTC ATGCATCGAT AAAGGGATTG ACAGGTTAAC 
    AGCATGCCGA TTCATTCAGT TATCATCTAG TGTTTTTTTA ACCTTTTGGG 
    ATGATAACTA TCATCCAGTG GATTTAATTG TTCACCTTAA ACTTTATAGC 
    CTTGGTGTTC CCTTAATTGC ATATTCTTTG AAATGTTTTC AAGAACTTAC 
    TCTTCTGTTG GTCATGTTCT ACTGGCAAAC AGGCATTTAT GTTGGAGGAA 
    GTAAAGTGGT TCATTTTACT CGAAAGAAAG AAGCAGAAGG ATCAGATTCA 
    TCCAATTCCA CCTCCAGCCT ATTATTAGAG CCTTCATCAG AGTGCCCAAC 
    GTTCCCAGAT TGTGGGTTTC AGCTGCCTGA TAGTGGTGTC GTCCTCACCT 
    GCTTGGATTG CTTCCTTCGG AATGGCTCTC TATACTGCTT CGAGTACGGA 
    GTGCCATCAG CCGTTTTCCT TGCAAAGCTG CGTGGGGGAA CCTGCACCAT 
    TGCCCAATCA GATCCATCAG AAGTTGTGGT ACACAGAGCC ATGTACTTAC 
    TTCAAAATGG CTTTGGAAAT TATGACATAT TTGAGAACAA TTGCGAGGAC 
    TTTGCACTCT ACTGCAAAAC TGGGCTTCTT CCTGTTGAGG AACCTGGCAT 
    TGGAACAAGT GGGCAAGCAT CTTCCGCCAT TGGAGTGCCA TTGGCAGCTC 
    TTCTGTCCAC TCCACTTAAG CTTTTTGCTG CTGGTCCACT TGGAATGGCC 
    ACTGTCACAG CTGGGATGTA CTGTGCTGGT AGATACATCA CTGACATAGG 
    AGTAAGAAAG GATGTGGCGA AAATTGAAGT GGAGAATTTA TCATCACACC 
    TTGGTAGACG CCTGATTGAA GATGAAGGAT CAGTGAACGT ACGGTCAGAG 
    AAACCGAAAA CCTTGCTGCC TATGAAGAGA AAGCGTGAGA GGTGATGGCG 
    ACTATATACC GCTCTTCGTC GATAATTGGT TCAGAACTGT GCATAATTTA 
    AACTTTACTC TTCGCCATAA TAAGTTTGAT ATAGATATGT ACCTCTGAAG 
    CGTGTTCTGA TTCAGTTAAG ACCACACTTC ACATGATCAA TTGAGCTACA 
    TTCCAAACTG AATATGTGAT GGAAATGTGA TAATTGAATC GTTGGAGTCA 
    AAAGTAGATA CTTACTGTTC TTTGAATATG ATACCTCACA TTCTAGTGCT 
    TTTATTTTCT GTTTATTTTC TTTTATCAAT ATTTTTTCTT ACTGGTCACA 
    ATATAATGTA ATAAGTTTCA GTAGTGGTGA AGACTTCTTT TGTATGGGCT 
    GTTTTCTCTA TGATGAAATC CATAGACTGA ATAGTGCAGA GAGGC

    Gene models with high sequence identity

    1. AT1G01225.1 [+] show detail - NC domain-containing protein-related
      E-value: 3e-75; Score: 281.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G01225.1

    Model type
    Protein coding
    Short Description
    NC domain-containing protein-related
    Computational Description
    NC domain-containing protein-related; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein-related (TAIR:AT4G00905.1); Has 173 Blast hits to 172 proteins in 34 species: Archae - 0; Bacteria - 24; Metazoa - 5; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR