K21832

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21832

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21832

Determination of introduced cDNA(s)

  • J033145I11 - Rice Full-length cDNAs - Original: J033145I11

    full reading [+] show sequence

    Nucleotide sequence: J033145I11 - full reading 
    GACTGATTTT AGCACAATTC ACATGGTATC AGAGCTAGGT TGCTCTTGCG 
    ATTCCCGTCG ATGTCCGCCG CCGGCGAGCT CTTCACCGGT CTTGGTCTCC 
    GGCGAGTGTC CTCCCTCATC TCTTCTCCCA GTGGAAGTTT TCTGCTGTGT 
    GTTCTGTTTT TCGTGGTCAC TTGATTTTGG GGATCGACCC TCTTCTCTTC 
    TGGCTGGAGC ATCTTTTTCT CCTGCTGGAT CTGCTACTTG ATTTTGGGGA 
    TCGACCCTCT TCTCTTCTGG CTGGAGCATC TTTTTCTCCT GCTGGATCTG 
    CTACTTGATT TTGGGGATCG ACCCTCTTCT CTTCTGGCTG GAGCATCTTT 
    TTCTCCTGCT GGATCTGCTT GACTGCTTTT TCTCCTGCTT CTTTTTCTCC 
    TGCTCGAGGT TGCATTATCC AATTGTGCTA GCTGCAGTGG TGTCGGCTAG 
    CTGCAGTCTG CAGGACCCGC AGCCTCCATC CTTTGCTGTC GCACTTGCCG 
    CCAGGACTCT TTCCAACAAA TCTGCCATGT GTTGGATCTC CTGCTGCTGA 
    TTACAATACC TAATTGCAGC CACTAATTGC AGCAGCGGCA GCCCAGTGCA 
    GCAGTGCAGT AGCAGCGTTT CAAGTGCAGC AGCAGCTCAG CCTTTCAGAT 
    TGCAACCATG GCATCAGATC CACTTGGGAA TGTCATTCTT TTGCCTTTGG 
    ATATAAAACT CAATGGACAA AATTACCGTG AGTGGGCTTC CTCTGCTCGT 
    ATGCAACTCA GGTCGTATGG TGTGGCCTCT CACTTGAATG ATGATCCACC 
    TCATGAGAAG GAAGATGAGA AGAAAATTGC AGCTTGGCGG CGTAATGATG 
    AGCGTGTGAT GGCCTTCTTG TGCATGAGCG CTGAGGTCCC CATTAGAATG 
    AATTTTATTG ATCTTTCTTC TGCTAAGAAG ATGTGGGAGT ATCTTCAACA 
    ACGCTATCAA CAGAGCAGTG CAGCTCTCCG CTTTTCTCTT CGCAAGAGCT 
    TGCAAAGCCT TGAACAGGGC GACATGACCA TTGAGGAGTT TCATAATGCC 
    TTCACCTCAT TGTCTAGACA ATTGGATTCT ATGGTGCCAA AGGCTGGAGG 
    TGGGTGCAGA CAGTGTATAT GCAAGGAGAA ATATGAGGAG CAGAGCCTTA 
    TGTTTGATTT TGTGATGCGT CTTCGGTTAG ACTTTGAACC TATTAGGGTG 
    CAGCTTCTTG GTCGGTCTAC TCTTCCTACC ATGGCTGAGG CTCTCGCAGA 
    CTTAATTGCC GAGGAAACTC GTCTACAGTC ACTTCCCAAC GCCACAACAC 
    CGCAACACAC TGTCCTTGCT TCTTCATTGA TGGGAACCTC CTTGTCTGGT 
    GATCATGCTT TCCAGCATGG GTCCTTAGCA ACTTCTTCCA CTCAGATTGT 
    TTGCTCCCAC TGCAAGAGGT CTGGTCACCG TGTTGAGAAA TGCTTCAAGC 
    TACATCCTGA ATTGTTGGCT GAGTTTAGGG CCAAGCGTGG TGCATCTCGC 
    CGTGCCCCTA GTACTTCAGT TACACTTGCT GCTCCCGCTG TGACTGCAGC 
    TTCAGTTAGT GCAACTTCAA CCAATCAGCC CTACATGAAT GCTTATCAAC 
    CTAATGGATC AGCTTCTTTG GCCCCTGCAC CAGGATCGTC AGACAAGAGC 
    ACTCGTTGGT ACTGGCCATC GCCATAGTAG TTCTCCTGGG AAGCTCTATG 
    TTCTCGATCA CTTGAGTCTT CCACCTTCAT CTTTTGGCTC CACCACCACT 
    AGTTCCACAG CCTTGGGTTA TGCATCTTCT ACAACTTTTC CACAATGGCA 
    TCATAGATTG GGGCATCTTT GTGGGTCCCG CCTTTCAACT TTAATTCGTC 
    AGGGTGTTCT AGGTCATGTC TCTATTGATA CTACTTTTGA TTGTACGGGT 
    TGTAAACTTG GAAAACAGAT ACAACTTCCT TACCCTATTA GTAATTCTAG 
    GACTAGTTGT CCTTTTGACC TTGTTCATTC TGATGTATGG GGCCCTGCCC 
    CATTTGCTTC TAAGGGTGGA CACAAATATT ATGTCATATT TATAGATGAT 
    TATTCGAGAT ACACTTGGAT TTACTTCATG AAACACCGTT CACAACTTTT 
    ATCCATATAC C

    Gene models with high sequence identity

    1. AT1G21280.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits ...
      E-value: 1e-07; Score: 55.80

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Polynucleotidyl transferase, ribonuclease H fold 4.00000300869883e-10
    HMMPfam Integrase, catalytic core 2.2e-06
    Gene3D G3DSA:3.30.420.10 3.00000067992871e-06
    ProfileScan Integrase, catalytic core 0
    HMMPanther PTHR11439 2.19999900980708e-25
    HMMPfam Retrotransposon gag protein 2.2e-05

    See the detailed result >

    AT1G21280.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR