K21849

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21849

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21849

Determination of introduced cDNA(s)

  • J033074H15 - Rice Full-length cDNAs - Original: J033074H15

    full reading [+] show sequence

    Nucleotide sequence: J033074H15 - full reading 
    GGGGCAGTTT CGACTTTTTG GAGAGGAGAG GGTGGGGAGG CGTGAGCGCG 
    AGGGAAGGGG AGGGGGTTTC TCGATTTCTT CCGCGCGGTT GCGGAATCGC 
    GAATTCAATT CGATTCCGCT CCACCACCAC CACCTCGCGC CGCCCAGCTG 
    CTCCGATTCG CGCTGCGGAG CTTCCCTTTT TCCACCCGCT GATCGATTGA 
    TTCGTTGTTT TTTGGGGGGG ATTTTTTTCT GGTGTGTGTG TTTTTTTTTC 
    CCGATCGGAT CGGTCCAGAT CGGGTCGATT TGGGCGGGGT GGAGGAGGTG 
    GAGGGAAGGG GGAGATGCGG ATCGAGGAGC TTCCGGGTGA TTCCGGCGGA 
    GGAGGTGGGG ATGGTGGTGG TGGTGGTGGC GGCGGGGCGC TGCTGCAGCT 
    GCGTCGTGGG GCGGCGGCGG CGGCGGCGGC GGTGGAGGAG GAGGGTGGGG 
    TGGTGATGCG TGTGGCTTTC GACGCGAAGC GCGCGGCGGT GGGCGTCGGC 
    GCGCGGATGC TGTTCTACCC GACGCTGGTG TACAACGTCG TCAGGAACCG 
    ATTCGAGCCG CAATTCCACT GGTGGGATCA GGTCGACGAG CATGTTCTGC 
    TCGGTGCTGT TCCTTTCCCC AGCGATGTTC TACGGCTGAA GGAGCTTGGA 
    GTTTGCGGTG TTGTGACACT GAATGAATCC TACGAGAGGC TGGTTCCCAG 
    GTGCCTGTAT GAGGCTCATG GAATTGAAAA CCTGGTGTTA CCAACTAGAG 
    ATTATCTTTA TGCACCATCA TTTGAGAACC TTTGCCGGGC TGCTGACTTC 
    ATCCACAGAA ATGCTTTGTG TGGGAAGTTG ACATATGTTC ACTGCAAAGC 
    TGGACGTGGA CGGAGCACAA CAGTTGTTCT TTGCTACTTG GTGCAATACA 
    AACAAATGAC TCCGGCTGAA GCTTATGAAC ATGTTCGCTT GCGCAGGCCA 
    AGGGTGCTAT TAGCTTCTGC ACAGCGGCAG GCTGTTGAGC AATTCTACCA 
    GCTTAGGGTG AAGAAATTTG GGAAATCCAT TTGCCTGGAC AGCCCAATAA 
    TGAAACCACC GCTGTTCCTT GCCACTCGCA ACCTCATTGC ATTTGACGAG 
    AAGACATTCG TCATGGTTTC CAAATCGGAC CTCGAAGGGT ATGATGCGGA 
    TACCTTGGCC GTTAACGTGG GCAGTGGCTT TGTGGGAGAT AAGCCTAGTA 
    TACCGCGTGC AGTTTGCGAG CCAGGCGGCC TTTGCAGGGT TCTCATACCT 
    GTGGGTACGA TGCCGTGCCC CCCGTAAGAA CAAGGAGGCA CTCCCTGTCC 
    CTGAGAGTAA CAATAGCGTG GGGAGCGAGA GCTGCTCCCT TGAGGCAGAG 
    CAACTCGCCA AACCTCACCC ATGTTTGCTT CAAGGTGTCA TGGTTAATCC 
    ATGATCGTTC GACTTGCATT CGCCGCGACC TTTCTTTTAA CTTTTTGTCT 
    GGCATGTCAT CCGTATATAT TAAAGCCAAG AACATGCAAA TGCAATGTGA 
    AGTCCTTAAC TCCAGTCTCC TCAGCAAGCA AAGAGTGCAG TTGCTTGGGT 
    ATGTACATAT CTGTAATAAG TTGACTTCTA CATGTACAGA GGTAAATGAC 
    AAGGTATCTC AAATCGCTGA CCATGTGTCC C

    Gene models with high sequence identity

    1. AT2G35680.1 [+] show detail - Phosphotyrosine protein phosphatases superfamily protein
      E-value: 7e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Dual specificity phosphatase, subgroup, catalytic domain 17.852
    ProfileScan Dual-specific/protein-tyrosine phosphatase, conserved region 13.606
    HMMPfam Dual specificity phosphatase, catalytic domain 1.4e-15
    Gene3D no description 6.8e-30
    PatternScan Protein-tyrosine phosphatase, active site 0
    superfamily (Phosphotyrosine protein) phosphatases II 3.6e-37
    HMMSmart Dual specificity phosphatase, subgroup, catalytic domain 1.2e-05
    HMMPanther PTEN-RELATED PHOSPHATASE (PLIP) 4.8e-105
    HMMPanther DUAL SPECIFICITY PROTEIN PHOSPHATASE 4.8e-105

    See the detailed result >

    AT2G35680.1

    Model type
    Protein coding
    Short Description
    Phosphotyrosine protein phosphatases superfamily protein
    Computational Description
    Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT5G56610.1); Has 1976 Blast hits to 1976 proteins in 288 species: Archae - 41; Bacteria - 150; Metazoa - 1097; Fungi - 157; Plants - 204; Viruses - 23; Other Eukaryotes - 304 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR