K21901

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21901

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21901

Determination of introduced cDNA(s)

  • J023031B06 - Rice Full-length cDNAs - Original: J023031B06

    full reading [+] show sequence

    Nucleotide sequence: J023031B06 - full reading 
    GACAAATCTC ACGCACTGTC TCTCGTTCGC GCAAAGCACG CTGCTTTTCT 
    CCGCTTTGCG AGCACCATAG CCTAGCCCAC CATGTGCGGC GGCGCCATCC 
    TCTCCGACCT CATCCCGCCG CCGCGGCGGG TCACCGCCGG CGACCTCTGG 
    CTGGAGAAGA CCAAGAAGCA GCAGCAGCAG AAGAAGAAGA ACAAGGGCGC 
    GAGGAGGCTG CCACTGCGCC AAGAGGAGGA GGATGATTTC GAGGCCGACT 
    TCGAGGAGTT CGAGGTGGAT TCCGGCGAGT GGGAGGTGGA GTCCGACGCC 
    GACGAGGCCA AGCCGCTCGC CGCGCCCCGG AGCGGCTTCG CTAAAGGTGG 
    ATTGAAAAAC ACTACTGTTG CTGGTGCTGA TGGGCCTGCA GCAAGGTCTG 
    CTAAAAGGAA GAGAAAGAAC CAATTCAGGG GTATCCGCCA GCGGCCATGG 
    GGCAAATGGG CTGCGGAAAT CAGAGATCCT CGCAAAGGTG TCCGCGTCTG 
    GCTTGGCACC TTCAACTCTC CTGAGGAAGC TGCCAGAGCT TATGATGCTG 
    AAGCACGAAG GATTCGAGGC AAGAAGGCCA AGGTCAATTT CCCAGATGGG 
    GCTCCAGTGG CTTCTCAGAG GAGTCATGCT GAGCCCTCCT CCATGAACAT 
    GCCTGCTTTC AGCATCGAAG AGAAGCCGGC CGTCATGTCA GCAGGCAACA 
    AAACCATGTA CAACACAAAT GCTTATGCCT ACCCTGCTGT TGAGTACACC 
    TTACAGGAGC CATTTGTGCA GATTCAGAAT GTCTCATTTG TTCCTGCAAT 
    GAACGCGATT GAGGATACTT TCGTGAACCT GTCCTCTGAT CAAGGGAGCA 
    ACTCCTTTGG TTGCTCGGAC TTTAGCCAGG AGAATGATAT CAAGACCCCT 
    GACATAACTT CCATGCTTGC ACCGACCATG ACAGGTGTTG ATGACTCCGC 
    ATTCCTCCAG AACAATGCCA GTGATGCAAT GGTACCTCCT GTGATGGGGA 
    ATGCTAGCAT TGATCTTGCT GACCTGGAGC CGTACATGAA ATTTCTGATC 
    GATGGTGGTT CGGATGAGTC GATTGACACC CTTCTGAGCT CTGATGGATC 
    TCAGGATGTG GCCAGTAGCA TGGACCTTTG GAGCTTCGAT GACATGCCCG 
    TGTCGGCCGA GTTCTACTGA GGGGTTTGGG GTGTAGCAAC TGGTGCCTGT 
    ATATATAAGG ACAAATGGAA TAAACATTCT GGACATCCAA GAAGCGGCAT 
    GTGTCTGTCG GGCGCTTCTA GTTGCGCTAT ATAGCTATGT TAGTATGTTA 
    GTATGTGCTG TGTCTAGCTT AGATGCTGAA GTCTCAAGTA CTATTTGGCA 
    GTGAAACTAT CTATCTGTAA CTGCTATATG AGGCTGGAAC AAGTTACTTA 
    GCTTCTACCT TATCTGTACT TGCTATAGTG GCTGTGAACC TTGTGGATCT 
    GAACTCTGAA GCCAATGTTT ACTATATAAT GTGGTTGGTT TTATAAACTC 
    TAGTTGATTT GGACCCCTGT CAATGGTCAT GCTATGGCTG GGGATAAGAA 
    CCATTGATGA TCATATTTGA CTAGAAACGC TGCTTCCAAA ATATCCCATA 
    AAGTAAAGCT GAACTTGTAC TAATGTTCTT GCACAAGTTG CAATAATGTT 
    GCCTTATGGA AAAACAGTTT CCGGACC

    Gene models with high sequence identity

    1. AT1G53910.2 [+] show detail - related to AP2 12
      E-value: 9e-37; Score: 152.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 6.4e-16
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.7e-35
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.8e-10
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.8e-10
    superfamily DNA-binding, integrase-type 3.9e-23
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 23.314
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.3e-22

    See the detailed result >

    AT1G53910.2

    Model type
    Protein coding
    Short Description
    related to AP2 12
    Curator Summary
    encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
    Computational Description
    related to AP2 12 (RAP2.12); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 2 (TAIR:AT3G14230.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR