K21908

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21908

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21908

Determination of introduced cDNA(s)

  • J023022P15 - Rice Full-length cDNAs - Original: J023022P15

    full reading [+] show sequence

    Nucleotide sequence: J023022P15 - full reading
    GGCTTTCCTT CTCCCCTCCC ACCAACTAAT CGATCTCCTC TCTCTCTCTC 
    TCTCTCCCTC TCTATCCCAT TCGCGAGGCG GCGTCTCCTC CTCCTCCCGT
    CTCTCTCGCT TCCCCCCCAA ATCCGGCGGC GAATCCAGGG CCCCGCGCCG
    CGCCGACGAC CACCGCCGAT CGCGACCAGG AGGGAGGATG CTGGGCGCCG
    CGAGGAGGCA GCTCGGATCC GGCCCCATGC TGGGGCAGGT GCTGCGGAGG
    CTCCGGCCGG CGACGGCGGC TGCAGCGGAT GCGGCGAGGG CGTACTCCGC
    GGCGGCGAAG GAGATGACTG TCCGTGAAGC GCTGAACTCT GCACTCGATG
    AAGAAATGTC TGCTGATCCT TCTGTTTTTC TGATGGGTGA AGAGGTGGGA
    GAGTATCAAG GTGCATACAA GATTTCAAAG GGCTTGCTTG ACAAGTATGG
    TCCTGAGAGG GTTCTGGATA CACCAATCAC AGAGGCTGGG TTTACTGGCA
    TTGCTGTTGG TGCAGCGTAT CAAGGTCTTC GACCTGTTGT AGAGTTCATG
    ACATTCAATT TCTCAATGCA GGCAATTGAT CATATCATCA ATTCAGCTGC
    CAAGTCAAAC TACATGTCAG CGGGTCAGAT ATCTGTCCCT ATTGTTTTCA
    GAGGACCTAA TGGAGCTGCT GCTGGAGTTG GCGCTCAACA CTCGCAGTGT
    TATGCGGCTT GGTATGCACA TGTTCCGGGT CTTAAGGTTC TGGTTCCATA
    TTCTGCAGAA GATGCTCGTG GCTTGCTCAA AGCTGCGATT AGGGATCCGG
    ACCCTGTTGT TTTCTTGGAA AATGAACTGC TCTATGGAGA ATCATTCCCT
    ATTTCTGCTG AAGTGCTTGA TTCTAGTTTC GCTCTGCCAA TTGGCAAAGC
    AAAGATAGAG CGTGAGGGTA AAGATGTTAC AATTACTGCA TACTCCAAGA
    TGGTTGGATA TGCTCTTCAG GCCGCAGATA TATTGTCCAA AGAAGGAATC
    AGTGCTGAGG TGATAAACCT TCGTTCAATT AGACCACTTG ATAGAGCTAC
    TATCAATGCA TCTGTTAGAA AAACAAATAG ATTGGTGACC ATTGAGGAAA
    GCTTCCCACA GCATGGGATT GGTGCTGAGA TATGCATGTC TGTTGTTGAG
    GAAAGCTTTG AATATCTTGA TGCACCAGTT GAGAGAATTG CTGGAGCTGA
    TGTACCCATG CCCTATGCTG CCAATCTTGA GAGGATGGCT GTCCCACAGG
    TTGACGATAT TGTCCGTGCA GCGAAGCGTG CGTGCTACAG AGCGGTGCCC
    ATGGCAGCAA CTGCCTGATA GGAGAGACCT CTTTTACATC ATCTTTCTTT
    TCCCGTCCGG CCAACATATG ATTCATAATG GTGTCCAACA ATTGCCCAAA
    CTCAAAGCGA GCTAATTTTG CAAGATATTT CCATGACCCC CACCTATTCT
    TTTAGCTGCA GTTGCATCAC TGCGTTCGTT GGTGGTGACC CAAATTTCCC
    TCTTTTTTTT TGGTGTGTAT GCGAGAATTA TGCAGCTTAT GGTGATTGGT
    TCACAGTACA CACTGGCGCT AGTTACATAA ATGAAAGAAA AATCTGAGCT
    CTTGATGG

    Gene models with high sequence identity

    1. AT5G50850.1 [+] show detail - Transketolase family protein
      E-value: 1e-166; Score: 583.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Transketolase-like, pyrimidine-binding domain 2.1e-64
    HMMPfam Transketolase-like, pyrimidine-binding domain 1.8e-48
    HMMPfam Transketolase, C-terminal 9.6e-41
    HMMPanther PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUB 4.3e-207
    HMMPanther DEHYDROGENASE RELATED 4.3e-207
    superfamily Thiamin diphosphate-binding fold (THDP-bindin 1.8e-71
    superfamily Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II 9.5e-48
    Gene3D no description 7.4e-79
    Gene3D Transketolase-like, C-terminal 4.4e-43

    See the detailed result >

    AT5G50850.1

    Model type
    Protein coding
    Short Description
    Transketolase family protein
    Computational Description
    MACCI-BOU (MAB1); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity; INVOLVED IN: defense response to bacterium; LOCATED IN: mitochondrion, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase E1 beta (TAIR:AT1G30120.1); Has 17839 Blast hits to 17830 proteins in 2804 species: Archae - 215; Bacteria - 11375; Metazoa - 619; Fungi - 227; Plants - 405; Viruses - 0; Other Eukaryotes - 4998 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR