K21913

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21913

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21913

Determination of introduced cDNA(s)

  • J013045D18 - Rice Full-length cDNAs - Original: J013045D18

    full reading [+] show sequence

    Nucleotide sequence: J013045D18 - full reading 
    GTACGCTCCT TGCGCCTCCC CAAGACGAGT CGCGGCTGAA CAGAAGAGGG 
    GGAGTAGGCG GCGATCTCCA TCTGGCGACT CGCGAGCAGA GCAGGGGAGG 
    GGATCCTGAT CTGGAAGAAG CTCTCCTCTT AATTTCAGCG CCTTAACCTT 
    AATACAAGTA CCAGTTTGAG TTTGTTTGTT CCCAAGTTGG ATCCGGCCCT 
    GGGTAATTTC TTTCTTGCTG AAGGTGGAGA GACTGAGCTG AGCTATGGAC 
    AACTTGTGGC ATCTCGGGGA TGAGTTCCGT GGGCAGTCGA AGGTAGTGGA 
    GGACCGTCAG TGGTCTCTCA TGACATCGAA GTTGGCTGAG ATCAACAAGT 
    CCAAGGCGGA GAGGACGAAT GAGCTTGACT ATGCGCGGAT GAACACCATC 
    CCTGATGTCA AGCAATGGGA TAAGGTATCC TACCACCAAG ATGAGAGCAA 
    GATGGACCAC CTCAATCTTG GCCTTATGAA TCTAGATCTT AAGATGAACG 
    ACATCAGGAT GAATGACGCA GCTATGAAGA ATCCTTTCCG CGGCATGGCC 
    TACAACATGA ATCAGCTGTA CCCCAAGGGA GGCAATGGCA ATGTTAACTC 
    GTTCAAGATG AATGTTGGGG TCAACAAATA TTTGCATAGT CCAAATGGCA 
    AAGATGTCAA TGGCAAAAAC AGTGGTGCCA ACAGCAATGG AAGTAACAGC 
    AGCGGGAACA ACAGCAGCAA CTCTGCTGTT GACAAACGAT TCAAAACATT 
    GCCAACAAGT GAGATGCTAC CAAGGAATGA AGTGCTCGGT GGATATATCT 
    TTGTTTGCAA CAATGACACC ATGCAGGAGG ATCTCAAGAG GCAGCTTTTT 
    GGGTTGCCAG CAAGATATCG TGATTCAGTC CGAGCAATTA TTCCTGGTCT 
    ACCTCTTTTC CTCTATAACT ACACGACCCA TCAGCTTCAT GGGGTATTTG 
    AGGCTTCTAG TTTTGGAGGA TCTAATATTG ATCCCACTGC ATGGGAAGAT 
    AAGGAGTGTA AAGGTGAATC TAGATTCCCA GCGCAGGTGA GGATCCGCAT 
    TAGAAAGCTC TGCAAGCCTT TGGAAGAGGA TGCTTTCAGA CCAGTGCTGC 
    ACCATTACGA TGGTCCAAAG TTTCGTCTTG AGCTCTCCAT AGCTGAGGCC 
    TTATCACTGC TAGACCTTTG TGAGAAAGAA GGCGTCTGAA CTGTTGAAGA 
    GGTGGTTGCT TTGAGGCTTT AGTACATATC GCTCTTGTAT GTTGTGGAAG 
    GTGGTTCACT ATGTTCTCAT GTTCGTTAAG CGCAAGCTGT TGGTTGCCCC 
    CTGCAAGGAC CTGGTACTTG AAGGCCTCTA ATACGTGTGC CTGTCTGTAT 
    TGTGCCGTCC GTAATCTTGA AAATGTGTAT GTTTTGCTAT TTATGTATTT 
    TGGTAGAGTA CACCCAGAAG GGAACCCCAA AATGGGGGGA TACTGTAATG 
    CATCATAATG CCCTAAATAA GGGCAGTTGA TGTTCAGAGT GTATTCGTGT 
    TGTATCTTAA AAACCTTGCA TTTGCCTTAA TGCTGCTTTG CACTTC

    Gene models with high sequence identity

    1. AT3G27090.1 [+] show detail - DCD (Development and Cell Death) domain protein
      E-value: 1e-88; Score: 324.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Development/cell death domain 5.9e-84
    ProfileScan Development/cell death domain 55.99
    HMMPanther GDA-1-RELATED 1.3e-117
    HMMPanther Kelch related 1.3e-117
    HMMPfam Development/cell death domain 8.3e-49

    See the detailed result >

    AT3G27090.1

    Model type
    Protein coding
    Short Description
    DCD (Development and Cell Death) domain protein
    Computational Description
    DCD (Development and Cell Death) domain protein; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT5G42050.1); Has 746 Blast hits to 671 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR