K21914

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21914

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21914

Determination of introduced cDNA(s)

  • J033114J20 - Rice Full-length cDNAs - Original: J033114J20

    full reading [+] show sequence

    Nucleotide sequence: J033114J20 - full reading 
    GACTCACATT CATTCCCTTC TCTCTCCTCC CTCCCTCCCC CGCCCCTCTG 
    CTCCCCTCGC CGGCGAGCCC AATGGCGGCG TCCGCCCTCG ACTCCGCCTG 
    GGAGGGCCTC ACCGGCAGCT TCACCGAGTT CCAGCTCGCC ACCGTCGTCA 
    CCTTCCTCCT CCACGAGACC GTCTTCTTCC TCTCCGGCCT CCCCTCCCTC 
    CTCTTCGAGC GCTTCGGCCT CTTCGCCAAG TACAAGATCC AGAAGAAGAG 
    CAATACCCCT TCTTACCAGA ATAGATGTGT GCTGCGTCTC ATTCTGTACC 
    ATGTCTGTGT GAACTTGCCT GTAATGGTTT TATCCTACCC TGCCTTCAAA 
    TTCATGGGCC TGAGGAGCTC TCTTCCTCTG CCACACTGGA CGGTTATTGT 
    TTCTCAAGTT CTTTTTTACT TTGTACTCGA GGATTTTATA TTTTATTGGG 
    GACATAGGGC ACTGCACACC AAATGGCTAT ACAAGCATGT TCACAGCGTT 
    CACCATGAAT ATGCTACACC CTTTGGCTTG ACTTCAGAAT ATGCCCACCC 
    TGCTGAAATT TTGTTCCTTG GGTTCGCCAC AATTGTTGGT CCGGCCCTCA 
    CTGGTCCGCA CTTGTTCACT CTATGGCTGT GGATGGTGTT GAGGGTATTG 
    GAGACAGTTG AAGCTCACAG TGGATACCAT TTCCCATGGA GCCCATCAAA 
    TTTCTTGCCA CTGTATGGAG GCTCCGACTT TCATGACTAT CATCACCGTG 
    TGCTCTACAC CAAATCAGGA AACTACGCCT CTACTTTTGT TTACATGGAC 
    TGGCTGTTTG GCACGGACAA GGATTACCGC AATGCCAAGG CTATCGAGGA 
    GAAAGACGGG AAGCATTTGT AAATTGTGGG GGCTACTCTC TTTCTCTTTG 
    TCCAAATCAT CGAAACAAGG GTTTGACATC TCGCAGTGGT GATAGCATTG 
    TGTTCATGGG AGGAAATAGG TGTCCTAGCC ACAGGTATCT ATCTCCTGAG 
    ATGATCCTAC AGTTTAGATT TTCTTTCCCC AAATTCACTA TACTATCATC 
    ATGAGACCTT TGTGTTTCTG GAGGCCACCA TGATGTAATT TGTCATAAGC 
    TTAATTTGAT GCGTGCTATT TTGTGGTTTG CTTGGACGGG GGTACATGCC 
    ATGACAGAAG TGAACTATTC GAATCAGAAA GTTGTCAGAT TAGTGAGTTA 
    ACGTTGAGAT GAGGTTTACT GGT

    Gene models with high sequence identity

    1. AT2G29390.2 [+] show detail - sterol 4-alpha-methyl-oxidase 2-2
      E-value: 1e-121; Score: 433.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther C-4 METHYL STEROL OXIDASE 1.6e-150
    HMMPanther STEROL DESATURASE 1.6e-150
    HMMPfam Fatty acid hydroxylase 5.5e-20

    See the detailed result >

    AT2G29390.2

    Model type
    Protein coding
    Short Description
    sterol 4-alpha-methyl-oxidase 2-2
    Curator Summary
    Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.
    Computational Description
    sterol 4-alpha-methyl-oxidase 2-2; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sterol 4-alpha-methyl-oxidase 2-1 (TAIR:AT1G07420.1); Has 2780 Blast hits to 2775 proteins in 484 species: Archae - 0; Bacteria - 626; Metazoa - 432; Fungi - 682; Plants - 470; Viruses - 3; Other Eukaryotes - 567 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR