K21916

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21916

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21916

Determination of introduced cDNA(s)

  • J033088G19 - Rice Full-length cDNAs - Original: J033088G19

    full reading [+] show sequence

    Nucleotide sequence: J033088G19 - full reading
    GTAGGGTCTC TGATAGATAA GACTAGTTTC TTGCCACATG AGAATGCTGC 
    ATCTTGGTAG TATGTTATCC TGTTTGCGAC ATCTCAAATG GCCACTGTTG
    GATTTATGAT CCAGGAAAGA CCCACATCTT TCTGTCACCC GCCAAACTAT
    CCTGTTACTT TTTATGGCCT GACAAACGTA AGAAAATACT TGCTCAGGGA
    AAGTTACCAA CCATCTATAA ACCTTGGGTA AGGAGATATA TTTTATTTTT
    GAGATGCTTT CTACTGTTGC CGGGACTCTT GGCTTGATTA TATTTGGAAG
    GTTGAGCTGT TAACCTTGCT GTCCAGGCTG CCCCTATAAC ATTTTAAGAA
    CTGATAAATT ACAAATCTGA AATTTCACAA ACACATTCGG TCATCCACTC
    TGGCACCTTG GGACACAATT TATTTGATTT TCTAGGTCAA TGAGAGAGCC
    ATTTTTCATG ACTAGTTAGT GGTATAGAAC AAGTTTAGAT TTATCAAATT
    CCACATTTTC TTATGGAAAA CAAAGCTTTC TTCTTCTTTT TTTGACTAAC
    AAAGCTTTCT TATTGATTAT GTATTCTTGT TACACTGCCA GCAAGAATGT
    GAGGAGTTGT CCCAGAAGGT AACTGAACTG ACAGCCGTAA ACAGCACACT
    CATGACAGAA CTCGACAAGC TTAAGAAGGA CTGTGAAGAC ATGGAAGCGG
    AAAATTCGCA GCTAATGGAT GAGATGGTGC AGTCCGAGGG CTCTAGTGTT
    ATAGCCACTT TGAGCGTCAA GATTGACACG TCAAAAGACC GCCATGGTAG
    CAGTAGCCAG CTAAATAAGC ACACAAATGA TGACAGCAAA GGGTAGTTTG
    ATTGATTGAG AACATGAACT GGAGGTTAAC TCTACTCTAC TGAGACCATG
    AGACGATGTG CTTTAGCCGC TTATTGTTAC CCCCATCACC ATCAGCTTGT
    TGGTCATTGC TTTCTGGAGC TACCATCGTG TGTGATATCG AGTTTTCGTC
    ACCTCATGCT TTCGTGAGGG ACCTGTAAAT TGTCAAGCGG TACAGCTAGT
    TAGTATTAGT TAAGTGGCTA AGCCACCGAG AAGTGTGTAC TCCAATTGAT
    ATTATTTCTG TAATACCTGA GCCTTATTAT AGTTGCGGAC TTCTTGCGAT
    AATGGACAGT TTTTGAGTCC TGATGGTTCA GTGATCAATA ATATTATGGA
    AATACAAACA TCATTTT

    Gene models with high sequence identity

    1. AT4G36730.2 [+] show detail - G-box binding factor 1
      E-value: 4e-08; Score: 56.20

     

    InterPro Scan Digest

    See the detailed result >

    AT4G36730.2

    Model type
    Protein coding
    Short Description
    G-box binding factor 1
    Curator Summary
    member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box
    Computational Description
    G-box binding factor 1 (GBF1); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic region/leucine zipper transcription factor 16 (TAIR:AT2G35530.1); Has 3891 Blast hits to 3827 proteins in 347 species: Archae - 8; Bacteria - 109; Metazoa - 1441; Fungi - 440; Plants - 1415; Viruses - 137; Other Eukaryotes - 341 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR