K21916

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21916

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21916

Determination of introduced cDNA(s)

  • J033088G19 - Rice Full-length cDNAs - Original: J033088G19

    full reading [+] show sequence

    Nucleotide sequence: J033088G19 - full reading 
    GTAGGGTCTC TGATAGATAA GACTAGTTTC TTGCCACATG AGAATGCTGC 
    ATCTTGGTAG TATGTTATCC TGTTTGCGAC ATCTCAAATG GCCACTGTTG 
    GATTTATGAT CCAGGAAAGA CCCACATCTT TCTGTCACCC GCCAAACTAT 
    CCTGTTACTT TTTATGGCCT GACAAACGTA AGAAAATACT TGCTCAGGGA 
    AAGTTACCAA CCATCTATAA ACCTTGGGTA AGGAGATATA TTTTATTTTT 
    GAGATGCTTT CTACTGTTGC CGGGACTCTT GGCTTGATTA TATTTGGAAG 
    GTTGAGCTGT TAACCTTGCT GTCCAGGCTG CCCCTATAAC ATTTTAAGAA 
    CTGATAAATT ACAAATCTGA AATTTCACAA ACACATTCGG TCATCCACTC 
    TGGCACCTTG GGACACAATT TATTTGATTT TCTAGGTCAA TGAGAGAGCC 
    ATTTTTCATG ACTAGTTAGT GGTATAGAAC AAGTTTAGAT TTATCAAATT 
    CCACATTTTC TTATGGAAAA CAAAGCTTTC TTCTTCTTTT TTTGACTAAC 
    AAAGCTTTCT TATTGATTAT GTATTCTTGT TACACTGCCA GCAAGAATGT 
    GAGGAGTTGT CCCAGAAGGT AACTGAACTG ACAGCCGTAA ACAGCACACT 
    CATGACAGAA CTCGACAAGC TTAAGAAGGA CTGTGAAGAC ATGGAAGCGG 
    AAAATTCGCA GCTAATGGAT GAGATGGTGC AGTCCGAGGG CTCTAGTGTT 
    ATAGCCACTT TGAGCGTCAA GATTGACACG TCAAAAGACC GCCATGGTAG 
    CAGTAGCCAG CTAAATAAGC ACACAAATGA TGACAGCAAA GGGTAGTTTG 
    ATTGATTGAG AACATGAACT GGAGGTTAAC TCTACTCTAC TGAGACCATG 
    AGACGATGTG CTTTAGCCGC TTATTGTTAC CCCCATCACC ATCAGCTTGT 
    TGGTCATTGC TTTCTGGAGC TACCATCGTG TGTGATATCG AGTTTTCGTC 
    ACCTCATGCT TTCGTGAGGG ACCTGTAAAT TGTCAAGCGG TACAGCTAGT 
    TAGTATTAGT TAAGTGGCTA AGCCACCGAG AAGTGTGTAC TCCAATTGAT 
    ATTATTTCTG TAATACCTGA GCCTTATTAT AGTTGCGGAC TTCTTGCGAT 
    AATGGACAGT TTTTGAGTCC TGATGGTTCA GTGATCAATA ATATTATGGA 
    AATACAAACA TCATTTT

    Gene models with high sequence identity

    1. AT4G36730.2 [+] show detail - G-box binding factor 1
      E-value: 4e-08; Score: 56.20

     

    InterPro Scan Digest

    See the detailed result >

    AT4G36730.2

    Model type
    Protein coding
    Short Description
    G-box binding factor 1
    Curator Summary
    member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box
    Computational Description
    G-box binding factor 1 (GBF1); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic region/leucine zipper transcription factor 16 (TAIR:AT2G35530.1); Has 3891 Blast hits to 3827 proteins in 347 species: Archae - 8; Bacteria - 109; Metazoa - 1441; Fungi - 440; Plants - 1415; Viruses - 137; Other Eukaryotes - 341 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR