K21922

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21922

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21922

Determination of introduced cDNA(s)

  • J023005B17 - Rice Full-length cDNAs - Original: J023005B17

    full reading [+] show sequence

    Nucleotide sequence: J023005B17 - full reading 
    GGAGTTCTTC ACCGGCTTCT TTCCCCTCCT CTCCGGACCA GGGAAGCAGC 
    TAACTGTCTG CGCAAGAAAG GTGGTTCAAG CACGATGGGA CGGAACCATC 
    TTTGCCTGGT CACTTGCTTG TGGATTCTGT CATGCGCAGT TCTGCTTCAT 
    GCTTCTCCTG ATGGATTGCT GAGAATTAGC CTGAATAAGA AGAGATTGGA 
    CAAGAAGACC TTGGACGGTG CAAAATTGGC AAGGGAGGAA AGCCATCGTC 
    TGAGAGCCGA CGGTTTAGGC GATGACATAG TTCCTTTGGA CAACTACCTG 
    GACACGCAGT ACTTTGGAGA GATCGGCATC GGCACTCCAC CACAGAACTT 
    CACTGTGATA TTCGACACTG GAAGCTCCAA CTTGTGGGTT CCATCAGTGA 
    AATGTTATTT TTCGATAGCA TGCTACTTAC ACCACAGGTA CAAGTCAAAA 
    GGGTCGAGCA GTTACAAAAA GAATGGAGAA TCTTGCAGCA TTTCCTATGG 
    GTCTGGATCA ATTGCTGGTT TCTTCAGTGA GGATAGCGTG CTAGTTGGGG 
    ATCTTGCTGT GAAAAATCAG ATGTTCATTG AGACAACCAG GGAACCGAGC 
    CTTACTTTCA TCATCGGGAA GTTTGATGGA ATTCTTGGAC TTGGATTTCC 
    GGAGATCTCT GTGGGAGGAG CCCCTCCAAT TTGGCAGGGA ATGAAAGAGC 
    AGCAACTGAT CGAGAAGGAT GTATTCTCCT TCTGGCTCAA CCGCGATCCT 
    GATGCACCGA CAGGGGGTGA GTTAATCTTT GGTGGTGTAG ACCCAAATCA 
    TTACAAGGGG AGCCATACAT ATGTTCCTGT TACCCGCAAA GGCTACTGGC 
    AGTTTGAGAT GGGGGATCTT CTTATTGATG ACTACTCAAC TGGGTTCTGT 
    TCTGGTGGTT GCGCCGCTAT TGCGGATTCA GGGACTTCAT TGCTCGGTGG 
    CCCAACAACT ATTGTTGCTC AAATTAATCA CGCAATTGGA GCTGAGGGAA 
    TTGTTAGTAT GGAATGCAAA CAAGTTGTGC GGGACTACGG GGACATGATC 
    CTCGAGATGC TCATAGCACA GGCAAGCCCC ATGAAACTGT GCTCTCAGAT 
    TGGTCTCTGT GCATTTGATG GTACTCGTTC TGTCAGAAAC AATATAGAGT 
    CTGTTGTTGA TAAAGAAAAG GTGGGCTCAG ATCTTTCCTG CACTGCTTGC 
    GAGATGGCTG TTGTCTGGAT ACAGAATCAG CTCCGACATA ACCAAACAAG 
    GGAGCTCATT TTGCAATATG CTGACCAGCT CTGCGAGCGT CTCCCAAGCC 
    CCAATGGCGA ATCGGCAGTC GACTGCGATG AGATCTCAAA CATGCCGAAC 
    CTTTCATTCA CCATAGCAAA CAAGACCTTC ACCTTGACAC CAGAGCAGTA 
    CGTAGTGAAG CTGGAGCAGC AAGGTCAAAC TGTTTGCATC AGCGGGTTCA 
    TGGCGTTCGA CGTGCCACCT CCACGCGGCC CACTCTGGAT TCTTGGAGAC 
    GTGTTCATGG CTGCATACCA CACTGTCTTC GACTTTGGCA AAAACAGGAT 
    TGGGTTCGCC GAGTCTGCTT GAATTGCTTG GCTAGGGCCT TCAGGATCAT 
    ACAACATATC AAGTATTGTA ATGTTTGTTA GGCAGCTTGT TTACTCGGTA 
    TTGTAACCTG GGAATGTCTA AAGGTATAGT GCATTAGTAG TAGCATGCAA 
    AACCTTGTAG AGGAATAAAC GTTTTCACGA TGGAGCTGTA TCAGCTATGG 
    ATATGCAGAT ATGGATCTTG GATGGTGC

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 3e-177; Score: 619.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Saposin B 12.404
    ProfileScan Saposin B 12.107
    Gene3D Peptidase aspartic, catalytic 3.2e-83
    Gene3D Saposin-like 0.00052
    Gene3D Peptidase aspartic, catalytic 1.7e-21
    FPrintScan Peptidase A1 5.6e-29
    FPrintScan Peptidase A1 5.6e-29
    FPrintScan Peptidase A1 5.6e-29
    FPrintScan Peptidase A1 5.6e-29
    HMMPanther ASPARTIC PROTEINASE-RELATED 4.1e-223
    HMMPanther Peptidase A1 4.1e-223
    superfamily Peptidase aspartic 5.7e-124
    superfamily Saposin-like 2e-23
    PatternScan Peptidase aspartic, active site 0
    HMMPfam Peptidase A1 3.7e-125
    HMMPfam Saposin-like type B, 1 0.0000000000011
    HMMPfam Saposin-like type B, 2 0.000000000067

    See the detailed result >

    AT1G11910.1

    Model type
    Protein coding
    Short Description
    aspartic proteinase A1
    Curator Summary
    Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
    Computational Description
    aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR