K21927

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21927

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21927

Determination of introduced cDNA(s)

  • J013000B09 - Rice Full-length cDNAs - Original: J013000B09

    full reading [+] show sequence

    Nucleotide sequence: J013000B09 - full reading 
    GGTAAGCTTA TCAAAAAAAA AAGAAAAAAA AGAAGTGAAG AAGACGGAAC 
    GGTGGGGCTG TCGAAGCATC CGCGTCCTCC GGGCTCCGGC GACTCCGCGG 
    CCGCGATCTC TTCGGCTCTC CCCGCCGGAG ACGGCCACCG CGTCGCCTCC 
    CCCTTCAACC GCCTCGATCC CTTCCTGTTC TTTCGGTATT TTGGTGTAGT 
    TTGCACTGGT TTCTGGATTT CTTGACAAAA TGGTGAAGCT GACAATGATA 
    GCACGTGTTA CTGATGGCCT TCCACTGGCA GAAGGGTTGG ATGATGGACG 
    GGATCAGAAG GACGCTGACT TTTACAAGCA GCAAGCTAAA CTTCTATTCA 
    AAAACTTATC AAAGGGGCAA CATGAAGCCT CGCGGATGTC AATTGAGACT 
    GGGCCATACT ATTTTCAGTA TCCTTATGTT CTCTGTGGCT ATTTTATTCT 
    GGGTATTGTT CATGACTGTT GAATTTGTTT CTGTTCTTTT GCAGTCCGTG 
    TGATATAGCA TATCTGGCTG CTAAATATTG ACATCTGAAT GTGCACAGTC 
    ATTCGGATAT TTTTTTTTAT CAAGTTCACA CGTTGCATCT CATTACATTT 
    CTTTGCTGGT AATGAAGATT TCAAATATGC TGGATAGTTG TATAGCTACA 
    CAGGTAAACA AGAAAATGGG TAGGCATTTG ATGAATCTAT GTGATTGGTC 
    CAAATTATCA ATCATGACTG TACAATAGCT AGTCTATATA TTCTCTAGTA 
    TTTCTCTATT TTCTATAGCA TTCACTTAAT TTTTAGGATC TTACAACTTG 
    CAAGCACATG GTACTTATTT GATGCTCTTG TTGATCTTGC TATTAATATT 
    TGAGTCCATT TATCATTACT AACTTTAAGA TCATAAGCTT ATTTAACCTG 
    AGACTTACAT CGTGTTCTGT TGAGAAAAGG CAGCACTCAG CACCCAGCTA 
    ATGTTGTTCT TGTAATGCAT GTTTTAGCTT GTATTGGTTT GCTAAGTTTA 
    TTGCAGTGTG ATCTTGTTGA ACCTTAATTC AAATAAACAG TTACATCATT 
    GAGGGGCGAG TATGCTATCT GACTATGTGT GACCGTTCTT ATCCAAAGAA 
    ACTCGCATTC CAGTACCTAG AAGATCTGAG AAATGAATTC GAAAGAGTCA 
    ACGGCAGTCA AATCGAAACA GCTGCAAGGC CGTATGCGTT TATTAAGTTT 
    GAACCCAGAG GAATCTTGCG AAATTAAATG ATGAGCTCTA TGAGGTGCAT 
    CAAATTATGA CTCGTAATGT TCAAGAAGTT CTTGGTGTCG GTGAAAAGCT 
    AGACCAGGTC ACTGAAATGT CAGCTAGGCT GACTTCTGAC ACAAGAATCT 
    ATGCAGATAA GGCTAAGGAT CTCAATCGCC AGGCCTTGAT TCGGAAGTAT 
    GCCCCTGTTG CCATTGTGAT CGGTGTAGTT TTGATGCTCT TTTGGTTGAA 
    GAACAAGATA TGGTAACTGC ACTAAACTAA GGAAGCTGGG CCTGCATTAC 
    CACACTGGTG CAAGAAAAAC CGAAAATTTA GGTAGATTCT GGATCAAGAG 
    ATATCAAGAG ATGCTTTGGT GACTTGTATC CCGTATCTGC CCATTCAAGC 
    GACTACTTCA GCTGCCTTTC ACCCTCCTCC CGACAAGCTA TTCAAGCCAA 
    TTCGTTGTAG CATACAGTAG ACCTTATAAC GGAACTCGGA CTTGATTTTG 
    TGAACCCTTG GAACCGTATA TACAAGAGCT CTGTAGAGTT GAATTTTTTT 
    ATATTGGGAT GATATTGCAT TTTATTTTGC AAACTCATGT AAGAATTCAG 
    GCTGAATATC CTATATTACA ATATCTCTGC TGCATGTGAC TC

    Gene models with high sequence identity

    1. AT1G11890.1 [+] show detail - Synaptobrevin family protein
      E-value: 1e-64; Score: 108.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Longin-like 2.19999900980708e-16
    ProfileScan Longin 0
    HMMPanther PTHR21136:SF4 1.10000150671642e-24
    HMMPanther PTHR21136 1.10000150671642e-24
    Gene3D Longin 2.19999900980708e-16
    HMMPanther SNARE PROTEIN SEC22 6.8e-14
    HMMPanther SNARE PROTEINS 6.8e-14
    HMMPanther SNARE PROTEIN SEC22 4.1e-26
    HMMPanther SNARE PROTEINS 4.1e-26
    HMMPfam Synaptobrevin 8.9e-19
    ProfileScan Longin 11.494
    ProfileScan Synaptobrevin 13.902
    Gene3D Longin 6.2e-09
    Gene3D no description 2.2e-07
    superfamily Longin-like 6.1e-09

    See the detailed result >

    AT1G11890.1

    Model type
    Protein coding
    Short Description
    Synaptobrevin family protein
    Curator Summary
    member of SEC22 Gene Family
    Computational Description
    SECRETION 22 (SEC22); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52270.1); Has 1577 Blast hits to 1577 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 342; Plants - 449; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR