K21929

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21929

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21929

Determination of introduced cDNA(s)

  • J023044P07 - Rice Full-length cDNAs - Original: J023044P07

    full reading [+] show sequence

    Nucleotide sequence: J023044P07 - full reading 
    GAGCGGCAGG CGGACTGGGC CTACTCCCGC CCCGTCGTGG CGCTCGACCT 
    GCTCTGGAAC CTCGCTTTCA TCACCGTCGC CGCCGTCGTG CTCGTGCTCA 
    GCCGTGGCGA GGACTCGCCC ATGCCGCTCC GGACCTGGGT CGCCGGCTAC 
    GCCCTGCAGT GCGTCGTCCA CATGGTCTGC GTCGCCATCG AGTACCGGAT 
    GCGCCGGGGG CAGCGTGACA GGGCCCCGGC GTCCGCCGAC GAGGAAAGGG 
    GAAGTGACGG GTCGTCTTCA TCTAGCGATG ATGATGTCAC GGAGGACGAT 
    CGCCGTGGTA GCTGCACCGA TTGCGTCAGT ATTGCAAAGC ACCTGGAGTC 
    AGCTAATACA ATGTTCTCCT TCATATGGTG GATAATTGGA TTTTATTGGA 
    TATCTGCTGG GGGTGAGGAT GTTATCCGTG ATGCACCTCA GCTTTACTGG 
    CTTTGCATAG TCTTTCTGGC ATTTGACGTG TTCTTTGTTG TATTCTGTGT 
    TGCTCTGGCT TGCATCATTG GTATTGCTGT ATGTTGCTGC CTACCTTGCA 
    TTATAGCTAT TCTCTATGCG GTTTCTGATC AGGAAGGAGC GTCAGAAGAT 
    GATATTCGCC AAATTCCAAG ATACAAATTT CGGAGAACAG ATGAACCTGA 
    AAAACAAACT GCTGATGAGA CAGGACCTTT TGGTGGAATA ATGACAGAGT 
    GTGGCACCAA TCAACCTATT GAGAAAGTAC TCGCACCTGA AGATGCGGAG 
    TGTTGCATTT GCCTTTCGGC ATATGATGAT GGTGCAGAGC TGCGTGAACT 
    TCCTTGTGGG CACCATTTCC ACTGTGCCTG CATTGATAAA TGGCTGCATA 
    TCAACGCAAC ATGCCCCCTG TGCAAGTTCA ATATCCGGAA AAGTGGCAGT 
    AGCAGTGGAA GTGAAGAAGT ATGATTGTGT GAATATCCTC CGGTCGAGAA 
    CACCGATCCA TTTCAACTTC ACACCTGTCT CTGCTAATGC AACCACAGGA 
    CCTGACCAGT GTAAATTTTG TATCCAAAAT GTGTGATTAG CGTCATATAT 
    GTACTTGAAG TGACTCAAGA CTGCTGTTCA TATCCACATA CATGGTTGTC 
    CAATGTGTCT TTTACTGTCC GGAATACATG CTTAGTTGCC CCGTGAGTTG 
    TAATTCTTCG AGTGATCCTC ACATTTCCTG CTTGTGTTAG CATGGTTTGT 
    GCTTATGCTC CTGCCTTGGT CATTGGTTCA GCACAAAAAC TGTTGTAAAT 
    GGGCTATCGG TCCTGTTGAA TTGTCAGGTA CAAACGAAAT GCGTCCTGCT 
    TATGATTCG

    Gene models with high sequence identity

    1. AT1G12760.2 [+] show detail - Zinc finger, C3HC4 type (RING finger) family protein
      E-value: 2e-101; Score: 366.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 0.0000012
    ProfileScan Zinc finger, RING-type 12.652
    HMMPanther RING FINGER PROTEIN 38 2.7e-16
    HMMPanther RING FINGER PROTEIN 6/12/38 2.7e-16
    superfamily RING/U-box 0.0000000000000013
    HMMSmart Zinc finger, RING-type 0.00000052
    Gene3D no description 0.00000000000091

    See the detailed result >

    AT1G12760.2

    Model type
    Protein coding
    Short Description
    Zinc finger, C3HC4 type (RING finger) family protein
    Computational Description
    Zinc finger, C3HC4 type (RING finger) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR