K21930

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21930

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased width (PATO:0000600) (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21930

Determination of introduced cDNA(s)

J023086O10 - Rice Full-length cDNAs - Original: J023086O10

full reading [+] show sequence

GAGAATCCGC TTTGCGAGCA GCGAGGAGGG TGGAATCGAG TTCGAGCGGC 
GGCGAATCGG GAGCGGCGAG ATTGGGGGAG GCGGCCGGAG ATGGAGGAGG 
AGGTGACGGG GAGTCGAGGG GGGTTGGGGG GAGGGAAGAA GATGGCGGCG 
GGGGAGGTGG AGCTGAAGGA GAAGGCGGGG ACGGCGTGGA GCCACTCGTA 
CCTGAACCAG AAGCCATGGC ACCCGCTCTC CTACCCGAAC CAGCGGCGGA 
AGTGGATCGC CGAGCAGATC CACGCCAACC GCGCGCGCCG CCAGGAGGAG 
GTGCAGCGTG AGTTCGCGCA GGAGCAGGAG TTCTTCCGCC AGACCGCCCT 
CTTCTCCAAG AAGGACAAGG AGAAGAGAGT GCAAAAGCAG CTGAAATTGA 
AGATGAGAAG AGGAGGTCTG GTGAAGGTGA TGCAACCCAA AGTGCTGCTG 
CTGCAAGCAC CTCTTCAATG CCTGATAAGG AACTTGACAA GACCCACGCA 
GGTCCAGATA AGAAAAACAG GCCAAAAGAT GTTTTTGGCC GGCCATTGCC 
AACAGAACAA GAATTTGAAG TGCTGAAAAA TGCTCCAAGG TTGGAGACAG 
GTGCTCCTGC GAGGGTTAAA CCATTTGGAG TTGAAGTTCG TAACGTTAGA 
TGTTTAAGGT GTGGAAACTA TGGTCATCAG AGTGGTGACC GAGAATGCCC 
ACTGAAGGAT GTGATCATGC CTAACGAGGA GAGCCGACTG AAAAGGGATG 
ATCCTCTTAC AGCTATAATG GCACAGACTG ATTCAAGTGA GCCTTTGAAG 
TGGGAACTTA GGCAAAAGCC AGGCATGAGC CCTCCACGTG GTGGATACAA 
CCCAGATGAT CCTAATCAGC AGATTGTAGC CGAGGACATC TTTGATGAAT 
ATGGAGGATT TCTTGGTGGA TGTGATATTC CAGCTCTTCT TTCCAACTTT 
TCTGCTAGCA AATCAAAGAA ACGCTCCAAG AGTAAAAGCA AGCATAGGCA 
GGCTGAGCCT GCTGCTCATG AGGAATCTTC ACACTCTGAA GCTGAGAAGA 
GCAACAGGAC ATCAAGGAGC AAGAGAAAGA AAGAATATTG TTCTGATTCG 
TCATTTTCTG GTGCTGAGGT GGAAGCTAGA AAAAGCAAGC AAAAATCAAA 
GCACAAGAAG AAACACCTGC CAGAGTCTTT GTCTGATTCA AAAGTTGAAG 
TTGGTAGAGA TACAAGAAGA CATCAAAAGA GAGAGCATAG GAAGAAGAAA 
AGAAATATCA CTGAGTCAGA GTCTTCATCT GATTCAGAAG TTGATATAGA 
TACAAGGAAA CATCCGAAGA GGGAGCACAG GAAGAAGAAA AGAGATGTCA 
CTGAGTCATA TTCTTCATCT GATTCAGAAG TTGAAGTTGA TAGAGATACA 
AGGAGGCATC CGAAGAGAGA GCATAGGAAG GAGAAAAGAA ATATGACTGA 
AAATGGGCAT TCAAGCCGAT CGAGGGAGAA GCACCACTAC AGTGACACTA 
GTACTTCGGA CAATGAGAAG CACTCAATGG GACATAAGGA TGAGCAATAC 
TACAGCGATT CAAGTTCTTC TAGGAGCAAT CGGCATTCAA GAAGGTCAAG 
GGAAAAGAGG TACTACAGTG ACTCAAGTTC TCCTGAGCAC AATAGGCATT 
CAGGGAGATC AAAGGAGAAG AGGGCCTATA CTGACTTGAG CACGCATGAC 
AGGGATAGGC ATTCAAAGAG ATCGAGGGAT AAGCGGGAGT ACACTGAATC 
AAGGCCTTAT GAGAGCAATA AGCATTCAAG GACATTGAAG GTGAACTGGC 
ACTACTCTGA TTCAAGTGCT TCTGATTATT CAAACTCCGA ACGGCACTAT 
AGTCATCGCC ATCGTAGAAG AAAATGAGCA GTGTTGTATA ATCTGCATGA 
TGTCTCCACA GAAGATCGCT CTGCCGTTTA TATGATGTCA TTAGCTACAT 
ATGCTTGGTC ATTTTCTTAA GGCCACCAGG GTCCACGGGT TGCTGGTGTT 
TGGTGACTGC AGCTGCTAAT CGACTTGTGA TGCGATAGTA ATGTATGTGA 
CTGAATTTTG TCTTCTGTAG AAGAATTGTT GTGCCTTTTG TTGTAGGCTT 
GTACCCGAGG GACTTTTATT AATTTAAAAA ATATCTTGTT TGGC

Gene models with high sequence identity

AT4G19190.1 [+] show detail - zinc knuckle (CCHC-type) family protein
E-value: 3e-102; Score: 128.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	CBF1-interacting co-repressor CIR, N-terminal	3.9e-11
HMMPanther	UNCHARACTERIZED	8e-45
HMMPanther	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	8e-45
HMMPanther	UNCHARACTERIZED	3.8e-93
HMMPanther	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	3.8e-93

See the detailed result >

AT4G19190.1

Model type: Protein coding
Short Description: zinc knuckle (CCHC-type) family protein
Computational Description: zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CBF1-interacting co-repressor CIR, N-terminal (InterPro:IPR019339), Zinc finger, CCHC-type (InterPro:IPR001878); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR