K21937

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21937

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21937

Determination of introduced cDNA(s)

  • J013098N03 - Rice Full-length cDNAs - Original: J013098N03

    full reading [+] show sequence

    Nucleotide sequence: J013098N03 - full reading
    GATCGCGTTG CCCAAATAAT TACACGAATC GAACCAAACC CTAGCTTTTC 
    CTCTTCGATT CCCGATCCCC CACCCAGCGA CTCGCCGGAA CCCTAGCCCT
    AGATCCCGCG CGGCTTGCCG CCGTGCTAGC CATGGCGTCC CTCAAGGAGC
    TCCTCCCGAC GCCCAAGGCG GCGGCGTCGA CGTTCTACGA CCACAGCAGC
    GACCCGTGGT TCAAGGAGCG GTATGGCGGG GAGTCGGCGC AATCCGACGC
    GGCGGCGGCG GCGGCGAAGC CTTCGGGCCC CGCCAAGCCC GTGCCGCCGT
    ACGGGAAGCG TGGCGGGTTC GTGCCGCGGC GGCCGGAGGA CTTCGGGGAC
    GGCGGCGCCT TCCCGGAGAT CCACGTCGCG CAGTACCCGC TCGGCATGGG
    CCGGCGCGAC GAGAAGGGCG GCTCGAAGAT CCTCGCGCTC ACCGTCGACG
    CCAAGGGCAG CGTCGCCTTC GACGCCGTCG TGAAGCAGGG TGAGAACGCC
    TCTAAGATCG TTTACTCAAA GCACAGCGAC CTCGTGCCCA AGATTGCCAC
    GGCTGATTCC GAGGCAACCG CGGACGACGA GGAGTACCAG AAACAGATCG
    AAGAAACCAC TGAACGAACT AAAGCTGCCT TGGAGAAGGT TGTCAATGTT
    CGGCTCTCCG CCGCACAGCC CAAGAATGTG CCGACGCATG ATTCAGAGTC
    AAAGTTTATC AAGTATAAGC CATCGCAGCA ATCGGCAGCC TTCAATTCAG
    GTGCCAAGGA GAGGATTATT AGGATGTCAG AGATGGCTCA GGATCCTCTT
    GAGCCACCGA AATTCAAGCA TAAGCGAGTG CCCCGCGCTT CTGGATCACC
    GCCTGTCCCA GTGATGCACT CGCCACCACG GCCAGTGACA GTGAAGGACC
    AGCAAGATTG GAAGATTCCA CCATGCATTT CAAATTGGAA AAATCCAAAG
    GGTTACACCA TACCACTCGA CAAGAGGTTG GCAGCTGATG GAAGGGGGCT
    GCAGGAGGTT CAAATTAATG ATAACTTTGC AAAGCTCTCT GAAGCACTGT
    ATGTGGCGGA GCAGAAGGCC AGGGAGGCAG TACAGATGCG ATCCAAGGTG
    CAGAGGGAGC TGCAGCTGAA GGAGAAGGAG AGGAAGGAGC AAGAGCTAAG
    GGCACTTGCA CAGAAGGCGC GCATGGAGAG GACTGGTGCC CCACCTGCAC
    CTACAGGGGT TCCTGCTGGT GGTGGTAGAG GTGCTGTTGG TGACAGGGAG
    GAAGATATGG ATTTGGAGCA GCCTCGTGAG CAACGAAGGG GGAGTAGAGA
    AGAAAGGGAA GCAAGGATTG AGCGTGACAG GATTCGTGAG GAGAGGAGAC
    GTGAGAGGGA GAGAGAGAGG AGGCTGGAGG CCAGGGATGC TGCAATGGGC
    AAGAAGAGTA AGCTCACTAG AGACAGGGAT CGTGATGTCA GTGAGAAGAT
    TGCCCTGGGC ATGGCAAGCA CTGGCGGTGC TAAAGGTGGG GAAGTCATGT
    ATGACCAGAG GTTGTTCAAC CAGGATAAAG GAATGGACTC TGGGTTTGCT
    ACAGATGATC AGTATAACAT CTACTCCAAG GGTCTCTTCA CAGCGCAGCC
    AACTCTATCC ACACTTTACA GGCCTAAGAA GGACGGTGAT TCTGATGTGT
    ATGGCGATGC AGATGAACAA CTGGAGAAGG TTATGAAGAC AGATAGGTTC
    AAACCAGACA AAGGATTTTC TGGTGCTTCA GAGAGGTCTG GAAAGAGAGA
    CAGACCTGTG GAGTTTGATA AACAGGAGGA GAATGATCCC TTCGGTCTTG
    ATCAGTTCTT GACTGAAGTG AAGAAGGGGA AGAAAGCTGT TGAGAAGATT
    GGAAGCGGAG GAGCCATGAG GGCAAGTGGT GGATCCTCAA TGAGAGATGA
    TTACGAGGGT GGAGGATCTG GGAGGTCCCG CATTAACTTT GAAAGAGGTC
    GTTGAGGTAT TAGATCTGCA TGTTTTGTTC AGAAGTTTCT CCATGCATTC
    CAAATGTTAT CTGGAGGGTA TTCTGTTGAG AATATCAACT TCTTGATGAG
    AGGACTTGAT GTCTGAGTTG TCTTAATGCA ACGTCTACTT CCAAGGGGCA
    TCTTAAGGAG TGTACCTGTT TAGATCCTGT GATTATGCTT GTTGTTTATC
    TATTTGTGGA TGGATCTGTA AGCTTAACTT ATCATCATTC CATATCCCTT
    ATATTTTGTG GTGCTTTATG AAGTCTCGAT GTGTCTGGCT GACCTTACAT
    TTTCTGGTAC TGTACCAAGT CTTTAAGATG TATCTGCCTA TCTGGCTGAA
    ATACTGAGAC ACGGGATACA TATAAATTCC GTGTTCTGTT TTTTCACAAG
    TTCT

    Gene models with high sequence identity

    1. AT1G77180.2 [+] show detail - chromatin protein family
      E-value: 4e-180; Score: 629.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SKI-interacting protein, SKIP 2.5e-233
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam SKI-interacting protein SKIP, SNW domain 3.9e-66

    See the detailed result >

    AT1G77180.2

    Model type
    Protein coding
    Short Description
    chromatin protein family
    Curator Summary
    Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.
    Computational Description
    SKIP; FUNCTIONS IN: transcription activator activity; INVOLVED IN: response to salt stress, response to mannitol stimulus, RNA splicing, response to abscisic acid stimulus; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR