K21940

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21940

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21940

Determination of introduced cDNA(s)

  • J013042L10 - Rice Full-length cDNAs - Original: J013042L10

    full reading [+] show sequence

    Nucleotide sequence: J013042L10 - full reading
    GGCGAGAAAA ATCCCCAGCG GGAGAGCTCA CGAACTGTTC CCTTCCCATG 
    GCGGCGCTGC CTCTCCTCCG GTGGGGCGCT TCCTCCCTCC GAGGAGGCCA
    CTCCTCCGCT CCGCCTTCGA GCCGCCTCTT CTCCGCGCTC CGCCGACCTC
    CCGCCGCCGC CCGCTGCGAG ACCGGCTCGA GGGTCATGCT CAAGGGGATG
    GACTACCCTG AGCTCGAGAA TTGGGTGCGG TCGCAGGGCT TCCGGCCAGG
    GCAGGCCATG ATGCTGTGGA AATGCCTCTA CGGGAACAAC GTATGGGCGC
    ATTGCTATGA CGAGCTGGCT GGTTTAAACA AGGACTTCAG GAAAATGCTA
    ACAGATCATG CTGATCTTAA GGCATTAACT GTGAAAGACA TTCTTAACGC
    GTCAGATGGG ACCCGAAAGA TACTGTTCTC TCTTGAAGAT GGATCAGTGA
    TTGAAACAGT TTGTCATTCC TTGCACTAGT GGCAGGACAA CTGTCTGTGT
    TTCAAGTCAA GTGGGTTGTG CCATGAATTG TCAGTTTTGC TTCACTGGAA
    GGATGGGCTT GAGAAAGCAT TTGTCTACAG CTGAGATTGT TGAGCAGGCT
    GTGTTTGCTC GTAGACTGTT TTCAGATGAA TTTGGATCCA TCACAAATGT
    TGTATTTATG GGCATGGGTG AGCCGTTGCA CAACATTGAC AATGTACTAA
    AAGCCTCAGC TATTATGGTT GATGAGCAGG GCCTTCAGTT TAGTCCTCGC
    AAGGTCACTG TCTCCACAAG CGGTCTTGTC CCACAGATAA AACGCTTCCT
    ACAGGAATCC AATTGTGCGC TGGCTGTGAG TCTTAATGCA ACAACTGATG
    AGGTGAGAAA CTGGATAATG CCTATTAATA GAAAATACAA TCTCAGCTTG
    CTTCTTGGTA CATTAAGGGA GGAAATTCGT TTGAAAAAGA AGTACAAAGT
    GTTTTTTGAA TACGTCATGC TTGCTGGAGT GAACGACAGT GTGGATGACG
    CGAAGAGACT AGTAGATTTA GTTCGCGGGA TCCCTTGCAA GATCAACCTC
    ATCTCTTTCA ATCCCCATAG CGGGTCACAA TTCAAGCCCA CTCCTGATGA
    GAAAATTATT GAGTTTCGTA ACATTTTAAT TCAAGATGGC CTTGTTGTAT
    TTGTTCGGCT CAGCAGAGGG GATGATCAGA TGGCTGCCTG TGGACAGCTA
    GGAGAGCCTG GGGACTACCA GCTACCCCTG CTCCGTGTAC CTGAGAAATT
    CCAGGTCGCT TTGTGACTCT AAACAGTAAG TACGGTACTA CAATCCTCAT
    AGATATTGTA GAATAGCTTT GACAAAAGAC ATGTAACTTT CATGCGGTTC
    TTAGAGGTCA TTCTCTGGGC CAACCTGACG ACTGACGGAA TATTTTTGTT
    ACTTTCTTTA AGGAAAATTT TTGTTGTTAC TACAACAAGA CAGTGTCTTC
    AGCTGGCTTA TGGCATGTAA AAGAACATTT AGGCATAGTG CCGCTAATCT
    GCTAAGTACC

    Gene models with high sequence identity

    1. AT1G60230.1 [+] show detail - Radical SAM superfamily protein
      E-value: 1e-150; Score: 134.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Radical SAM 0.00000000047
    superfamily Radical SAM enzymes 6.2e-19

    See the detailed result >

    AT1G60230.1

    Model type
    Protein coding
    Short Description
    Radical SAM superfamily protein
    Computational Description
    Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT3G19630.1); Has 6934 Blast hits to 6928 proteins in 2336 species: Archae - 3; Bacteria - 5075; Metazoa - 1; Fungi - 1; Plants - 140; Viruses - 5; Other Eukaryotes - 1709 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR