K22014

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22014

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22014

Determination of introduced cDNA(s)

  • J033131A11 - Rice Full-length cDNAs - Original: J033131A11

    full reading [+] show sequence

    Nucleotide sequence: J033131A11 - full reading
    GGCTCGTTCC ATTTCCATTC CTACGCCGAG GTCTTCTTCC CCACTCTCTC 
    CCTCCCACGC CGCCGCCCCC GCAAACCCTA GCGAACGCAG CGGAGAGAGG
    AGAGAGCGCC ATGGCCGTGG AGGTGGCGAC GCAGAAGATC AGGTGGGGAG
    AGCTCGAGGA GGACGACGAG GGGGACCTCG ACTTCCTGCT CCCGCCGCGC
    GTGGTCTCCG GGCCCGACGA GAATGGGTTC AAGAAGGTGG TCGAGTATCG
    CTTCGACGAC AAGGGGAACA AGGTGAAGGT CACCAGGACC TTCCGCGTCC
    GCAAGATCGC CCGCGCCCGC CTCTCCAAGA GCGCCATCGA GCGCCGCTCG
    TGGCCCAAGT TCGGCGACGC CGTGCAGGAG GACGTCGGCG CGCGGCTCAC
    CATGGTGTCC ACCGAGGAGA TCGTCCTTGA GCGCCCACGC GCCCCAGGGA
    GCAAAGCTGA AGAACCAAGT GCTTCTGGTG ATCCACTGGC AAGCAAGAGT
    GGTGCAGTTC TCATGGTTTG CAGAACCTGT GGGAAGAAGG GTGATCACTG
    GACCTCAAAG TGCCCCTACA AGGATCTAGC TCCCCAGACA GAAGCTTTTG
    TGGACAGGCC TCCCACTGCT GATGGCTCTG GACCTCCAGG TGGCGCCGTG
    AAGGGAGCAT ATGTTCCTCC AAGCATGAGG TCTGGTGCTG TTGATAGGGT
    TGGACATGAC ATGAGGCGTA GGAATGATGA GAACTCTGTC CGTGTGACCA
    ATCTATCAGA GGACACCCGT GAACCCGACC TACTTGAGCT ATTCCGCACA
    TTTGGTCCAG TTAGCCGTGT CTACGTTGCG GTGGATCAGA AGACTGGAGC
    AAGCAGGGGG TTCGGCTTCG TCAACTTTGT TCACAGAGAG GACGCTGAGA
    AGGCTATCAG CAAGCTCAAT GGTTATGGTT ATGATAACCT TATCCTTCGT
    GTTGAGTGGG CAACACCAAG GCCAAATTAA TTTTGTTACT CCCTGCAAGC
    GTTACATACT TTTCATGAAT GTTCGATCAG TATGTCTCTT GAAATAGTAC
    TTTTGGTTTG CGCATATCCT GTGTCCTGAA CTTAAGCTGT ACTATTTTTG
    CTTGGACGAG AATAACTGAA CTCGCAGCTA TTTCCTATAT CAGCTGATAT
    TTGC

    Gene models with high sequence identity

    1. AT3G11400.1 [+] show detail - eukaryotic translation initiation factor 3G1
      E-value: 1e-107; Score: 386.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 18.803
    HMMSmart RNA recognition motif, RNP-1 1.5e-23
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 9.6e-108
    HMMPfam eIF3g 2.7e-37
    HMMPfam RNA recognition motif, RNP-1 3.8e-20
    superfamily RNA-binding domain, RBD 2.8e-27
    Gene3D Nucleotide-binding, alpha-beta plait 1.1e-26
    HMMPIR Translation initiation factor 3, RNA-binding subunit 1.4e-101

    See the detailed result >

    AT3G11400.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor 3G1
    Curator Summary
    One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3).
    Computational Description
    eukaryotic translation initiation factor 3G1 (EIF3G1); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3G2 (TAIR:AT5G06000.1); Has 999045 Blast hits to 996617 proteins in 36057 species: Archae - 21687; Bacteria - 600727; Metazoa - 203286; Fungi - 24712; Plants - 56079; Viruses - 69236; Other Eukaryotes - 23318 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR