K22019

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22019

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22019

Determination of introduced cDNA(s)

  • J023012P08 - Rice Full-length cDNAs - Original: J023012P08

    full reading [+] show sequence

    Nucleotide sequence: J023012P08 - full reading 
    GGCACATGCA TACACCCATT CTCTCCAGTG GATTATTCAC CGTTCTCTCC 
    TGCTGCCATT GCACGTCTTG CTTGCTGCCA ATCCCAGATT CATGCACGGG 
    CACTGAGGAC GCTGGAGATT CCACGGAGCG AGATCAGCGA CGCGGCGGTG 
    GAGAGCGTGG CGCCGAGGCT GCCCAACGTG ACGTTCCTGG ACATCAGCAG 
    CTGCACCAAG ATCGGGGCGC GCGCGCTGGA GGCGTTCGGC AAGAACTGCA 
    AGTCGCTGGT GGGGCTCCGG CGGGTGATGC ACCCGACGGA CGTCGCCGGC 
    AAGGCGTGCC AGCGCGACGA GGCGCGCGCC ATCGCCTGCA CCATGCCGAG 
    GCTCCGGCAC CTGGAGATGG GCTACATGGT GATCGCGACG GATGCGGTGC 
    TCGACATCCT CGCGCGGTGC CGCGACCTCC GGTTCCTCGA CCTCCGCGGC 
    TGCTGGGCCG TCGACGACAA GTTCCTGCAG GAGAGGCACC CGGGGCTGAG 
    GGTGCTCGGC CCCGGCGTCG ACGACTGCTT CGAGAACAGC TACCTGGAGG 
    AGTGCTCCGA CTACTCCGAC GACTCCTCCA TCTACTCGTG GGAGCTCATG 
    GAGGACGACG ACGACGGCTA CTACGCCGTC GGGAGCGACG ACGAGGCCAT 
    TTGGGACGGC GGCCAGGCCT CGAGAACCTG GAGGTCAGGT TCTACGGCGG 
    CGGCTTCAGC GAGAGCTATG CTGGCTTCGA TTGGCCACCA TCACCATGAC 
    CATGAGAGCA GCTCAGCTCA GCTCAGTCCC TGACCTCACT GTCCTTGCTC 
    TTCCTCTCGA GCCGTGTACC TAAGCTTGCA GTTGCAGTCT CGCAGATGTG 
    TTGTTGTACT CTGTGTGTGT GCGCGTGTGC CAGTGTGTCA TCAGCATCAC 
    TAGCTTGCAG TGCAGATATG TGTGAGTGAA CTTCTACGGC TAGTTGTTAC 
    TACTACTACA TCCAGATGTA AACTTTGGTG TTTACATGAA GAAGCAATGC 
    AAATGCAATA TGTGGTG

    Gene models with high sequence identity

    1. AT4G08980.5 [+] show detail - F-BOX WITH WD-40 2
      E-value: 6e-35; Score: 145.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RNI-like 0.000000000000047
    Gene3D no description 7e-17
    HMMPanther N7-RELATED PROTEIN 8.8e-21
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 8.8e-21

    See the detailed result >

    AT4G08980.5

    Model type
    Protein coding
    Short Description
    F-BOX WITH WD-40 2
    Curator Summary
    Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response.
    Computational Description
    F-BOX WITH WD-40 2 (FBW2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process, posttranscriptional regulation of gene expression; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05460.1); Has 1165 Blast hits to 1048 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 539; Fungi - 16; Plants - 571; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR