K22029

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22029

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22029

Determination of introduced cDNA(s)

  • J013060L05 - Rice Full-length cDNAs - Original: J013060L05

    full reading [+] show sequence

    Nucleotide sequence: J013060L05 - full reading 
    TATGGATAAT ACTGAGGAAT GCAATACTCG ATCTTCTTCC TTGTATAGCA 
    TGGAAATGCT AGAAAATGAG CCTGTAGATT TTGAAAACAA TAGCTCACTC 
    TGGCTGCCTC CTGAACCTGA GGATGAAGAG GACGACCATG ATGGTGCTTT 
    ATGTGATGAG GATGATGGGG AGGATGCCAC AGGAGAGTGG GGATATCTAC 
    GCTCAAACAG TTTTGGCAGC GGACATTGTC GAAGTAGAGA TAAGTCAGCT 
    GAGGAACACA AGAGAGCCAT GAAAGACATT GTTGATGGGC ATTTTCGGGC 
    ATTGGTTGCT CAACTTCTTC AGGCGGAAAA GGTACAGTTG GTTGATAAAT 
    CTGGCAAACA GAGTTGGCTA GATATAGTTA CTTCTCTATC TTGGGAAGCT 
    GCATCTATTC TAAAACCAGA TACCAGCAAA GGGGGACGGA TGGACCCTGG 
    TGGCTATGTG AAGGTGAAAT GCTTGGCTTG TGGTCGTCCA AGTGATAGTT 
    TTGTTGTAAA AGGAGTTGTT TGTAAGAAGA ATGTTGCTCA TCGGCGCATG 
    GCGTCACGGA AAGAAAAGCC ACGCATCCTG ATCCTTGGTG GTGCACTTGA 
    ATATCAGCGC ATATCGAATT TGCTTTCAAG TTTTGATACT TTACTGCAGC 
    AGGAAACAGA TTATTTGAAA ATGGCAGTTG CAAAGATCAA AGCCCACCAA 
    CCAAGTGTAG TGTTGGTAGA GAAATCTGTG TCTCGATATG CTCAGGATTT 
    ATTCTTGGAG AAAAACATTT CACTTGTTCT GAATATCAAA AGGCCACTTC 
    TGGAAAGGAT ATCACGTTGC ACTGGTGCTC ATATAGTTCC GTCAATTGAT 
    TACGTGTCAT CCCAAAAGCT TGGGCATTGT GATCTATTCC ATGTGGAGAA 
    ATATGTTGAA GAGCATGGGA CTGCTGGAGA AGGTGGAAAG AAAATGCTGA 
    AGACCCTTAT GTTTTTTGAA GGCTGCCCAA AGCCCTTGGG TTGTACAATA 
    TTGCTCAAAG GAGCTAATGG CGATGAGCTG AAAAAAGTGA AGCATGTTGT 
    GCAATATGGA GTCTTTGCAG CCTATCACTT GGCTCTGGAA ACATCTTTTC 
    TTGTGGATGA AGGTGCAACA CTTCCAGAAC TCCCTCTTAA GTCACCAATT 
    ATTGTTGCTT TGCCAGATAA GCCTTCTAGT GCCGATAGAT CCATTTCAAC 
    TATACCTATT TTACAAATGC CTACTGCTTC ATCACCAAAC GATAGCTTGC 
    AAGCATTTGA TGTGCAAACG GATGGTTCAA CATTTAATGG TTTTCAAACA 
    ATGGACCAAA CAATGGTAAT GTGCTCTCCT GAGTATAAAA GCTGCAAAAA 
    ACTGGGAGCT GGTTCTGCCC AAACCGAATC TGCCCATTTC AATGGCCAGG 
    ATAAAAATAT TGCCTGTTTG CATGGTATGG TTCCTTGGTC ATCTACTGAT 
    CCCTTGGTTC AGCAATCGGC CAGTTCACTT TGTCATTGTC CTTCTTGTTC 
    TAGAGATGTA GTTAATAAAA AGCATTTTGA AGAACGTCAA CCTGAAACAT 
    CTGGACATAC CCTGGATAAT GATTTCAATG CGTTGTCTGC ACATCGAACA 
    AATTTGGAGT CTGTTGAGAG CGGTCACTTA TTTGCCTATA ATTCTGAGAA 
    TGGTGACAAG ATAAGAGCTA AACTGTCTGT TCCTCTCAAT GTGCAAATTT 
    CTCTTGATGA TGACAGTTCA AAGGATGATT CAGTAATAAA AAAAGATGAA 
    ATTCCGGCAT CTCCTGCTGA CAACCAGAGT ATATTGGTTT CTCTGTCTTC 
    CCGTTGTGTT TGG

    Gene models with high sequence identity

    1. AT3G14270.1 [+] show detail - phosphatidylinositol-4-phosphate 5-kinase family protein
      E-value: 3e-156; Score: 548.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D G3DSA:3.50.7.10 8.30001403791594e-45
    superfamily SSF52029 1.9e-47
    HMMPanther PTHR11353:SF14 1.30000495407324e-57
    HMMPanther Chaperonin Cpn60/TCP-1 1.30000495407324e-57
    HMMPfam Chaperonin Cpn60/TCP-1 1.1e-29

    See the detailed result >

    AT3G14270.1

    Model type
    Protein coding
    Short Description
    phosphatidylinositol-4-phosphate 5-kinase family protein
    Curator Summary
    Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization.
    Computational Description
    FORMS APLOID AND BINUCLEATE CELLS 1B (FAB1B); CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (TAIR:AT4G33240.2); Has 8765 Blast hits to 8134 proteins in 458 species: Archae - 587; Bacteria - 13; Metazoa - 3836; Fungi - 1744; Plants - 978; Viruses - 3; Other Eukaryotes - 1604 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR