K22045

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22045

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22045

Determination of introduced cDNA(s)

  • J033138H09 - Rice Full-length cDNAs - Original: J033138H09

    full reading [+] show sequence

    Nucleotide sequence: J033138H09 - full reading 
    GGCCGATCCC TTCCCCCATG GTCGGCGTGC TCGCCGGTTC CACCCAAACC 
    CTAGCAACCT CACGCCGCCA CCTCCCTCGC CGCCGGCCGT CGCCCTCGTC 
    GCCGTGTGTC TCCGCCGTCA GCCGCCGGCC GCCCTCAACC GCGGGCTGCT 
    GATTCTGCTT TCGCCCGCAT CGGCCACCTG ACCGGGAGAG AGAGGAAGAG 
    AAGGGGGGAA AGGAAGAGGA GTAAAAAGGA GAAGGAAGAA GAACACAGGG 
    GGGAAAAAAG AAGAAGAAGA AGAAGAGAAG AAACGGGGAA AGGGAAGAAT 
    TCGGGGATTT CTCTGTGGGT TTCGTCAGAT CCTCCTTCGA TTTGTGGTTC 
    TTGCTGCCAG GGTCGTGGTG CGAATCAAGA AGTGGAAACC TCCACCCATC 
    GCTCATCTTC ACGCGGTTAA GGAGCGAGCG ATCAAATCAG GGGATAATGG 
    AGGAGGACAG CGTCATCAGC AACGGCGGCA GGGAGGAGGA GGTGGTGGTT 
    GCGAACGGCA GTGGCGGAGG GGTAGGGGGG ACGGCGAGGA GCAGCGGTGG 
    GGGAGGGGGG AAGGTGGTGC AGGTGCTGCA GAGGAACTTT GGCGAGGTGC 
    AGGGGATTTT GGAGCAGAAC CGTGTGCTGA TCCAGGAGAT CAGCCAGAAC 
    CATGAGGCCG CGACGCCGAT GGCCTCACCC GCAACGTCGC CCTCATCCGG 
    GAGCTCAACA CCAACATCGC CCGTGTCGTC GATCTCTACG CTAATCTCTC 
    CGGCTCCTTC TCCCGCTCTG TCACTGCCGC TGCCAGCGCC AATAACACCA 
    ATGCCACCAA CAGCACCTCC CCTTCTGCTG CCGCCGCAGC CAAGGCAAGC 
    AAGCGGTCCC GCGCCACCGA CACCGAGTAG AGCGCCTACA ACTCCGGCTA 
    TCCGATTTCT TCTCCTTCTC GCCCCCATTT TGTTCTCGCT TTTTTCTTTC 
    TGTCTAGAAT TTTAGATTTA CTGAGCAGCA GGAGGACAGG AGGTAGATTC 
    GGTATCCTGC TAAACTCTTT TTCTCTTTTC CCTCTTTTTT TCTCTTGATG 
    TAATTCAGAG CTGAGATGGA CATGACAACA GTAAACACCT GCCTTGTCAG 
    AGATTAAAGA AAGATGCAGA TATGATAGAC TG

    Gene models with high sequence identity

    1. AT1G72630.1 [+] show detail - ELF4-like 2
      E-value: 2e-09; Score: 39.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1313 1.1e-18
    HMMPfam Protein of unknown function DUF1313 1.4e-12

    See the detailed result >

    AT1G72630.1

    Model type
    Protein coding
    Short Description
    ELF4-like 2
    Computational Description
    ELF4-like 2 (ELF4-L2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 4 (TAIR:AT1G17455.2); Has 149 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR