K22111

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22111

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22111

Determination of introduced cDNA(s)

  • J033091H09 - Rice Full-length cDNAs - Original: J033091H09

    full reading [+] show sequence

    Nucleotide sequence: J033091H09 - full reading 
    GCTCGGCGTC CCCGCCTTTA CGCGAGAATA ACCCTCCCGA AACCCTCCTT 
    CCCCGATCGA TGCCGCCGCC GCCGCCTCCT CCGCCGGAGT GGGCCGACCT 
    CCCGGTGGAC GCGGTCCTGG CGGTGTTCGA GCGGCTGGGC GCGGCGGAAG 
    TGCTGATGGG CGCCGGGGTG GTGTGCCGCA GCTGGCTCCG CGCGGCCACC 
    CGCGAGCCGC GGCTCTGGCG CCGGGTGGAC CTCACCGCCT GCTTCGACCC 
    CACCGTCGAC ATGGAGGCCA TGGCGCGCGC GGCCGTCGAC CGCGCCGGCG 
    GACGCCTCGA GCACTTCGCC GCCGAGCGCT TCGTCACCGA TGAGCTCCTC 
    CTCTACGTCG CCAAGAGAAC TAGCTGCTTG AAAAGTCTTC GGCTACGTGA 
    TTGCATAAAA ATCTCAGAGA AAGGCTTGGT TGCTGTTGGC AAGACATCTC 
    CCTGTCTTGA GGAACTTGAG CTCACTACCT GCACCATCAG TATTTTGCTG 
    AAGGCTGTTG GCGAAGCATT TCCGAACCTG AAGTGTCTGC GACTGAACCA 
    TCGTTGGTTT GATGTTCAGT TTGATGAGTT CAGAGATAAC TTCCATGCCC 
    TTGGAATAGC CTGCAGCATG CACAGGCTAC GCCATCTTCA GATCTTTGCC 
    AATCGGCTCC GCAACAATGC ACTTGCTGCC ATCCTTGACA ACTGCCCGCA 
    CCTTGAGTCC CTTGACTTGC GTCAGTGCTT CAACGTCGAT GTGGATGCAG 
    AAGTGAGAGC AAAGTGTGCA AGGCTGAAGG ATGTGAGGTT CCCAAACGAC 
    TCAACCAAGG ACTATGAGTA TGAGACTTTT ATTGAGACAC CATCACTAGA 
    TTCGCTCCCA CTTCCATTTC CCGCAGCAGT TCCTCAATGG CCCTTCCATG 
    GGAATGACGA GGATGACGAC AATGATGGTG ATCAGGACGA TGACGATGAT 
    GGTGATCAGG ACGATGATGA CTTGGGCGGT CACAGGGTGA CAGAGTATGG 
    TTTTATCATC GGTGACTACC ATGTCCGCGG TCGGATCATC CACCATGAGT 
    AACTCGACAT CTACATGCCG TAATTAGCAG GTTTTGATGT CCCAGCGTCT 
    GAGTCTCAGG AAATGGAAGG TAGGTGTTCA GAAGTAAGGT AATTCGCTGA 
    GCGCTGTAAG TTATTTCTGT TGTAGTAGCT TACTACAACA GAAGGGCGCA 
    TTTAGAACGG TTCTGTATCC AACTGCAAGT CTGCAACCGG TCTAGTGACC 
    TCATGTGTAG TGGTAAAACC TTTGTTCC

    Gene models with high sequence identity

    1. AT4G05460.1 [+] show detail - RNI-like superfamily protein
      E-value: 1e-38; Score: 157.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther N7-RELATED PROTEIN 5.4e-44
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 5.4e-44
    Gene3D no description 5.9e-37
    superfamily RNI-like 2.5e-20

    See the detailed result >

    AT4G05460.1

    Model type
    Protein coding
    Short Description
    RNI-like superfamily protein
    Computational Description
    RNI-like superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05497.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR