K22112

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22112

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22112

Determination of introduced cDNA(s)

  • J033051M06 - Rice Full-length cDNAs - Original: J033051M06

    full reading [+] show sequence

    Nucleotide sequence: J033051M06 - full reading 
    GCCTCTCTCG CCGTCGTCGC GCCTCGACGG CTTTTGCTCC CCTCTCCCCC 
    ACCGCCTCCT CCGGCCGCCG CCGCCGCCGC TGCCGCCGCC CGACGACGTA 
    GTCAGGGGGG CTCGTCAGGA GTAAGGAGGG AGATGGGGCT GAGGGAGAAG 
    AAGCGGAACC AGAGGCGCGT GCTCGCCCGG CGCTCGGCCG CTCCCCGCTC 
    CGGGGAGGGC AAGGACTTCC TGCCGCTGGA AGAAAGGCCT GGGAAGAAGA 
    GGGCCCGGGA GGAGCAGCCC GAGGAGCCGG AGAACACGTC CACCGTCCTC 
    TACATCGGGC ACATCCCCCA TGGGTTCTAT GAGGAACAGA TGCAAGGTTT 
    CTTTCAGCAA TTTGGAACTG TTAAAAGGTT GAGGATTGCC CGAAACCGCA 
    AGACAGGAAA GTCCAAGCAT TATGGGTTCA TTGAGTTTGA GAACCCTGAG 
    GTAGCAAAGA TTGTGGCAGA TGAGATGAAC AACTACCTGC TGTTTGAGCA 
    CACTTTGCAA ATTGCGATTG TTCCACCTGA GAAAATTCAT CCAAAATTGT 
    GGAAAGGTGT GCGACGGGGG TTTATACCAA TTGATCGGGT AGCAATTGAA 
    CGGAGGAGGC TGAACAAGGA TAAAACAATA GAAGAGCACA AAAAGTTGGT 
    TGACAAAATC GTAAAACGGG ATGAGAAGCG TCGCAAAAGA ATCAAAGCTG 
    CTGGGATTGA TTACGAGTGT CCACCCCTTA TCGGCAGCGT TCAGCCTTCA 
    GCTAAGAAGA TCAAGTTTGA GGATTAGTGC CTTTTGACCA GTAGTGACAG 
    GACAGTCGAG TAAAATGACT GGTTTGTTTT TAGTGACGAA GACGTGTCAA 
    CATCATTTTG TTGCGTGTTT AATCGGTGTT GTATCAGTGT GACCAAAATT 
    GCACAACGAA GCAGGAAATT TCTGAGATTA CGACTGGTAT ATCTTTGAGA 
    AAATAGAAAT CATACTGTGT TTTCCCGCCG CTC

    Gene models with high sequence identity

    1. AT5G04600.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 2e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 15.477
    HMMPanther POLY-A BINDING PROTEIN 2 6.1e-18
    HMMSmart RNA recognition motif, RNP-1 1.4e-19
    superfamily RNA-binding domain, RBD 2.8e-23
    Gene3D Nucleotide-binding, alpha-beta plait 3.3e-25
    HMMPfam RNA recognition motif, RNP-1 3.5e-15

    See the detailed result >

    AT5G04600.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G47120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR