K22119

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22119

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22119

Determination of introduced cDNA(s)

  • J023140I01 - Rice Full-length cDNAs - Original: J023140I01

    full reading [+] show sequence

    Nucleotide sequence: J023140I01 - full reading 
    GATTTATTTT CTTTCTCTCT CTCTCGGCCT TAATCGCATA TAACGATAAT 
    TGATATGGAT AATTGGATTG GATTATATGC AGCTGTATCA CAAATTCACA 
    ATCCCACAAT CTCATTTTCT TTTTTACTCG GTGAACCACT AAAACAGTGT 
    GAAATGGGCA GCTGTTTGGC GTTTTCAAGA AAGAAAATAT TGTTAAACTG 
    ACCTTTTTTG ACAGTCATCT TCAGTTTTTT TTTTTTGTTT AAGCCCTTCC 
    TCTCCTCACT CACACTGCCC TGTTCATCTC TTTCTTTTTT ATTCGATTCC 
    TCTATTCCAT TCCACACGCA TTGCCGCTGG TAGTAGAAGT ATAGTATCTC 
    TCCGCGACCG AAGATTTTAA AAAGGAAGCA ATTTGCCTCT TTTTTTTTTT 
    TGGCGCACCT CGATTAGTAG TAGATTTTAG AGGCGAATGT GAGCGGTCAA 
    ATCCTTCTTT TTTAGCTTGT GCGCGTTGTG TTTTGTGCTC TCCTTTTGTC 
    AGTTCCTGAG GCGCTCTCTC CTGTGCCTTT GTGTTTAGCG TGCGTGACCG 
    CGAGCGAGGT CGAGGAGTGA GAGGGAGTGA GGCGGCGGCG GCGGCGGCCA 
    TGGCGCAGCA GCAGCAGCAG CAGAGTGCGT GGGAAGCGGA GAAGATGTTG 
    GACGTGTACA TCCATGATTA TCTTTTGAAG AGGAACCTGC AGAGCACTGC 
    CAAGGCATTC CAAGCAGAAG GCAGCGTGTC TTCCGATCCT GTTGCAATTG 
    ATGCCCCAGG GGGTTTCCTC TTGGAGTGGT GGTCTGTCTT CTGGGACATC 
    TTCATTGCAA GGACGAACGA GAAGCACTCT GATGTTGCTG CTTCGTACAT 
    TGAGTCAATT AAAGCTCGAG AGCAGCAGCC ATCACAGCTG CAGCAGCAAG 
    AGGCTCATTC CCAGCAGTCA TCACAGCAGA TCCAAATGCA ACAACTCCTA 
    CTACAGAGGC ATGCACAGCA GCAGCAGCAG CAGCAGAGTC AGCAACAACC 
    ACAGCAACAA CGCCGCCAGC AGAAGCAACA ACAGCGTAGT GAAAGCAGTC 
    ATTTGCCGAC AAGTGCACAT AATGGTTTGG TTTCTGCTGA TCCTCCAACA 
    CGACAAAGCA CTTCAGCTGC AAGTTCTTTG TCTGCAAAGA TGTACGAGGA 
    GAGGGTGAAG AATTCTGTTC AAAGGGACAC CTTAGATGAA GCACCTGCAA 
    AGCAAAGGTT TACAGAAAAT ATTGGACAAC TGCTGGAATC AAACTCATCA 
    TTTATGCTGA AGTCCGTTGC AATAACAGCT CAGGCTTCAG GGCAAATTTT 
    CCATGGATCA ACTGGTGGCG TGTCAGGTAC TTTGCAACAG GTTCAGGCCC 
    GGAACCAACA ACTCCAGGCA TCAACACAGG AAATAAAGGT AGACACAAAT 
    GCTGCTGTAC ACATGAGAGC TGCAGGGGCA GATGGATCAT TAATTGGAGT 
    ACCAGGCGCT AACCCAGCAG GGAACAATTT GACGTTGAAA GGGTGGCCTC 
    TTACTGGCTT AGACCAGCTT AGATCTGGGT TTCTCCAACA GAAATCTTTT 
    ATGCAGTCTC CCCAACCATT GCACCATCTA CAATTTCTCA CTCCACAACA 
    ACAGCAGCTT CTGCTTCAAG CACAACAAAA TATGACATCT TCACCTGGAG 
    AGATGGACAG CAGAAGGCTT CGGATGCTTT TGAGTAGCCG AAACATTGTT 
    CCTGGGAGGG ATGGTCAATC AAATGCCTAC ACGGAAGTTA TTCCTAGTGT 
    GGGCCCTTCA TTGCAAAATA TGTGCTCACC TGTGCAGCGC ATGGAGACAG 
    ATATGCTGAT GAAGAAGATA GCAGCTATAC AGCAGCACCA GCAAAGCAGC 
    AATCAGCAAC AGCTCCTTCA GCATTCTTTA CTTAGCCAGC AACCACCAAT 
    CTCTAATCAC CTTCCAGGCC AGCAGGAAAA AATGGGAGCT GGAAGTGTTA 
    CTATTGATGG AAGCCTGTCT AATTCATTCC GTGGAAGTGA ACAGGTTTCC 
    AAGAATCAAA ATGGGCGAAA ACGCAAACAG CCAATCTCAT CGTCTGGTCC 
    AGCCAATAGT TCTGGCACTG GAAACACCGC GGTCCCCTCC TCAGAACCCT 
    CAACTCCTTC ATCGCAAAGC CCAGGAGACA CAATTTCAAT GCCCTCGCTG 
    CACCACAATG CTAGCTTATC AAAGGCTTTA GTTGTTTACG GTACCAGTAC 
    AGCAGGGACA ATGGGATCAC CATCAAATCA ACTTGCTGAC ATGGATCGTT 
    TTGTGGAGGA TGGCTGCTTG GAAGATCATG TGGATTCGTT CCTGTCGCAT 
    GATGATGCAG ATCGAAGAGA TGGCAGTCGT ATGGAATCTA CTAAAGGATT 
    CATCTTCCGA GAGGTCTCTT CTGTACAAGC AAGCACGAAC AAGGTTGTAT 
    GCTGCCACTT CTCATCAGAT GGAAAGCTAC TTGCTACTGG GGGTCATGAT 
    AAGAAGGTGG TATTGTGGCA TGCTGAAACT TTAAAACAGA AGTCAGTATT 
    GGAGGAACAT TCTCTTTTGA TAACTGATGT ACGATTCAGT CCAAGCATTC 
    CACGCCTTGC TACCTCCTCA TTTGATAAAA CTGTCAGGGT CTGGGATGCT 
    GACAATCAAG GCTATTCAAT TCGAACGTTC ACTGGGCACT CAGCATCTGT 
    TATGTCACTG GATTTCCACC CAAACAAGGA TGACCTCATT TGTTCTTGTG 
    ATGGGGATAA TGAAATTCGA TTCTGGAGTA TCAACAATGG AAACATCGTC 
    CGGATATTTA AGGGAGGATC AAGCCAGCTG AGATTTCAAC CACGTCATGG 
    GGGATATCTT GCAGTAGCTT CGGAGAATGC TGTCTCTATA CTTGATGTGG 
    AGACTCAAGC TTGCCTTAGG AGATTTGAGG GCCACACAAA GCATGTCGAT 
    TCAGTATGCT GGGATCCCAG TGGCGAATAT GTTGTATCTG TCAGTGAAGA 
    CACGGTGAAG GTGTGGTCTG TGAATGCTGG GAGCGATGAT CGCTGCGTGC 
    AAGAGCTTAG CTGTACCGGG AGCAAGTTTC ACTCGTGTGC TTTCCACCCT 
    TCATATTCAT CTATGCTTAT CATTGGTTGT TACCAGTCTC TTGAGCTGTG 
    GGACATGTCG GAGAACAGAA CGATGACGCT CGCAGCTCAT GACAGCCTCA 
    TCACAGCCCT GGCGTCGTCA AGCTCCGGTT TGGTCGCTTC CACGAGCCAC 
    GACAAGTTCG TCAAGCTGTG GAAATGATGT GCTTTCAAGC TAGCCGCGCC 
    CTCTAACCCT CTTCTAAGGA TGGGCCTTTT TCTTCCTCAT TTTTTGGTCA 
    CACCATCAGC TCTGAAGAGC TATTGTGTGA TGATGGTATA AACACTCTAT 
    ATGGTATAAT ATCCCCCACA AAGTAGCTGG CTACTGAATG ACTGATGAAA 
    ATATTGCTAT CCTAGTATAC CTTTTGCTGA CCCTGGGAAA GTAGCATTTT 
    GTACAGAACA TGAACTATGC TTTAGTATTA ATCATAGTCT ATCTGAACTA 
    C

    Gene models with high sequence identity

    1. AT4G32551.1 [+] show detail - LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
      E-value: 0; Score: 729.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40 repeat 2 10.976
    ProfileScan WD40 repeat 2 13.516
    ProfileScan WD40 repeat 2 13.416
    ProfileScan WD40 repeat 2 9.372
    ProfileScan WD40 repeat 2 10.609
    ProfileScan WD40-repeat-containing domain 38.467
    ProfileScan LisH dimerisation motif 9.822
    superfamily WD40 repeat-like-containing domain 7.1e-63
    HMMSmart LisH dimerisation motif 0.00021
    HMMSmart WD40 repeat 6.8e-06
    HMMSmart WD40 repeat 6.2e-08
    HMMSmart WD40 repeat 2.6e-08
    HMMSmart WD40 repeat 58
    HMMSmart WD40 repeat 9.5e-08
    HMMSmart WD40 repeat 0.52
    HMMSmart WD40 repeat 7.4e-05
    Coil coiled-coil 0
    PatternScan WD40 repeat, conserved site 0
    HMMPfam WD40 repeat, subgroup 3.8e-06
    HMMPfam WD40 repeat, subgroup 4.1e-10
    HMMPfam WD40 repeat, subgroup 2.2e-07
    HMMPfam WD40 repeat, subgroup 3.4e-08
    HMMPfam WD40 repeat, subgroup 0.00032
    HMMPfam LisH dimerisation motif, subgroup 2e-07
    HMMPanther WD40 REPEAT PROTEIN 1.1e-40
    Gene3D WD40/YVTN repeat-like-containing domain 9.8e-62

    See the detailed result >

    AT4G32551.1

    Model type
    Protein coding
    Short Description
    LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
    Curator Summary
    LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.
    Computational Description
    LEUNIG (LUG); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: LEUNIG_homolog (TAIR:AT2G32700.6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR