K22127

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22127

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22127

Determination of introduced cDNA(s)

  • J013089M24 - Rice Full-length cDNAs - Original: J013089M24

    full reading [+] show sequence

    Nucleotide sequence: J013089M24 - full reading
    GGCTCACTTT CTCCATCGTT GACGGGCTTC TCCTCCTCCT CCTCCTCTCC 
    CCCCTCGTCG CCGCCGTAGC CGGGGGGCGC CGCGGCGAAG CCGCCGATGC
    GGCCGGGTCC AGCCGCGGAC GCCGCCTTCG TCGATCCACG CCGCGCCGTT
    GGAAGAACAT GCTATGTGTT TGAGCAAAGA TTTTCTGAAT TAGTCGTCTC
    CTGCAGCAGG CTATTAGGTT ATTAGTGCAA GACAACTTCC TAGTTCATTT
    TGTAAATTGT AACTCTTCGC ACAAACAGTC AAATAGTCTC CACTCTCCAG
    TGGCTATTGA CCAATCACCA TGGAGACCCC GACAAATCTC ACCAACACAA
    TATCTGCAGT TCACCTGTTA AAAATCAATG GATATTCAGT AACCAGAGCA
    CTTGGTTGTT CAGAGTATAT CTCGTCGAGG AGATTGGCTG CAGGTGGATA
    TGATTGGGAA GTTCTTTACT ATCCACGCTA TTATGAGCAT GGTGTGTACT
    GGATAGCACT TCGACTTATG TTTATGAGCA AGGAATGTAA GCATGAGGTG
    AAGGCAGCTC TTAAATGTCA GTTAGTACAT GAGGCACAAA TTTATCTGCC
    ATCCGGAAGT AAAAGTGTAT CCTCTAAATA TACAGGGCAA CGAGATTGCG
    GGCCAGCGCT CCTGCTTGTA AAACAAGATG ATTTGCCAGG ATCCAATTAT
    TTCATCGGGG ATTCCTTTGT TGTGGAGTGC ACCATCACTG TGTTAAGAGA
    GCCACAGGAA GCTGTGACTA ATGTTTCTCC AAATGTTTCC AATCCATGCT
    GTGACTTGCA AATGCACCTT GGTGAACTCT TGCTGAGTGA AAAGGGGGCA
    GATGTCACGT TTGTTGTTGC AGGTGAATCT TTCTTGGCAC ACAAGATCAT
    CCTCGCTGCT AGATCCCCTG TCTTCATGGC TGAGTTCTTT GGACCCATGA
    AGGAGAGTAG CTCACAGTGT GTGGAGATCA AGGACATAGA GGCATCAGTC
    TTCAAGGCCA TGCTTCATTT CATTTACACT GGTACATCAC CGGAGCTTGA
    TCAGCAGCAT GTCGTCAGTG ACTCGGAGCA GGACATCACA ACAATGACAC
    AGCATTTGCT TGTTGCTGCA GACAGGTATG GATTGGACAG GCTCAAACTG
    ATCTGCCAAG ATAGGCTCCA CGATGACATC AATGTGGAGA CTGTTGCGAC
    AACTTTGGCT TTCGCAGAGC AGCATAGCTG TACACAGCTG AAGGACAGGT
    GCATCGAGTT CATCATCTCT TCTCGTGCAA ATCTTGATGC TGTTATGGCA
    ACAGAGGGTT ATAAGCTTGT GATAGCAAGC TGCCCGTCGG TTCTAAGTAC
    CCTTCTGAGG GCAGCGGTTG GGAGATAGAA AGTGCTAAAT AGCTGAAGAT
    TTACCACTAC AAGGAAAGCA GGAATACTGG TTGGAAATGC AATTTCCAAG
    GGGCACTCCT GCAAATTATT AAAGGGAAGT ACTGCTCACC AAAAGGCAGT
    CTTTCGTAAC CTATATTCAA TAGGAAAAAT GAGAAATTAA TGGGAAAAAT
    GTACAGCAAT AATAAAATTC AAGTGACAGT ATATACCATA GAAGTGCATT
    AAGGTCCCTG CAAAAACAAA AGAAAAAGAA GTGCCTCAAG GAACTCCGGG
    AAAACAGAAG AAGAGGATGG TCCATGAGCA ACCTATGATT TGAGAAACAA
    AACCAGTTAG TATGTTCTTA TTTCTAGGGA ACCATAATAG CATTTCTTTA
    CTTACATAAG AATTGAGTTT GTGCATTAGG CTTGTTCACT GTGTACTCCA
    GCCACTGTAT CCGACTTCCT TGTTGTTGAC AACATTTGTG ACTACCTCAT
    GAGTAATATC ATGTACTTGC TGGTGTGTGT ACAGTGACTG TCTCCCATTG
    TTTAGGATGT TGCAGGATGG TGCACATGTT GAATCAACCC GATCTCTATC
    T

    Gene models with high sequence identity

    1. AT5G19000.1 [+] show detail - BTB-POZ and MATH domain 1
      E-value: 2e-61; Score: 234.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan BTB/POZ-like 18.162
    ProfileScan MATH 9.243
    superfamily BTB/POZ fold 4.7e-31
    superfamily TRAF-like 0.000000000088
    HMMPfam BTB/POZ 8.2e-23
    HMMSmart BTB/POZ-like 6.1e-22
    HMMPanther BTB-RELATED 2e-71
    HMMPanther Kelch related 2e-71
    Gene3D BTB/POZ fold 8e-27

    See the detailed result >

    AT5G19000.1

    Model type
    Protein coding
    Short Description
    BTB-POZ and MATH domain 1
    Computational Description
    BTB-POZ and MATH domain 1 (BPM1); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 2 (TAIR:AT3G06190.1); Has 5705 Blast hits to 5596 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 3900; Fungi - 59; Plants - 1504; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR