K22127

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22127

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22127

Determination of introduced cDNA(s)

  • J013089M24 - Rice Full-length cDNAs - Original: J013089M24

    full reading [+] show sequence

    Nucleotide sequence: J013089M24 - full reading 
    GGCTCACTTT CTCCATCGTT GACGGGCTTC TCCTCCTCCT CCTCCTCTCC 
    CCCCTCGTCG CCGCCGTAGC CGGGGGGCGC CGCGGCGAAG CCGCCGATGC 
    GGCCGGGTCC AGCCGCGGAC GCCGCCTTCG TCGATCCACG CCGCGCCGTT 
    GGAAGAACAT GCTATGTGTT TGAGCAAAGA TTTTCTGAAT TAGTCGTCTC 
    CTGCAGCAGG CTATTAGGTT ATTAGTGCAA GACAACTTCC TAGTTCATTT 
    TGTAAATTGT AACTCTTCGC ACAAACAGTC AAATAGTCTC CACTCTCCAG 
    TGGCTATTGA CCAATCACCA TGGAGACCCC GACAAATCTC ACCAACACAA 
    TATCTGCAGT TCACCTGTTA AAAATCAATG GATATTCAGT AACCAGAGCA 
    CTTGGTTGTT CAGAGTATAT CTCGTCGAGG AGATTGGCTG CAGGTGGATA 
    TGATTGGGAA GTTCTTTACT ATCCACGCTA TTATGAGCAT GGTGTGTACT 
    GGATAGCACT TCGACTTATG TTTATGAGCA AGGAATGTAA GCATGAGGTG 
    AAGGCAGCTC TTAAATGTCA GTTAGTACAT GAGGCACAAA TTTATCTGCC 
    ATCCGGAAGT AAAAGTGTAT CCTCTAAATA TACAGGGCAA CGAGATTGCG 
    GGCCAGCGCT CCTGCTTGTA AAACAAGATG ATTTGCCAGG ATCCAATTAT 
    TTCATCGGGG ATTCCTTTGT TGTGGAGTGC ACCATCACTG TGTTAAGAGA 
    GCCACAGGAA GCTGTGACTA ATGTTTCTCC AAATGTTTCC AATCCATGCT 
    GTGACTTGCA AATGCACCTT GGTGAACTCT TGCTGAGTGA AAAGGGGGCA 
    GATGTCACGT TTGTTGTTGC AGGTGAATCT TTCTTGGCAC ACAAGATCAT 
    CCTCGCTGCT AGATCCCCTG TCTTCATGGC TGAGTTCTTT GGACCCATGA 
    AGGAGAGTAG CTCACAGTGT GTGGAGATCA AGGACATAGA GGCATCAGTC 
    TTCAAGGCCA TGCTTCATTT CATTTACACT GGTACATCAC CGGAGCTTGA 
    TCAGCAGCAT GTCGTCAGTG ACTCGGAGCA GGACATCACA ACAATGACAC 
    AGCATTTGCT TGTTGCTGCA GACAGGTATG GATTGGACAG GCTCAAACTG 
    ATCTGCCAAG ATAGGCTCCA CGATGACATC AATGTGGAGA CTGTTGCGAC 
    AACTTTGGCT TTCGCAGAGC AGCATAGCTG TACACAGCTG AAGGACAGGT 
    GCATCGAGTT CATCATCTCT TCTCGTGCAA ATCTTGATGC TGTTATGGCA 
    ACAGAGGGTT ATAAGCTTGT GATAGCAAGC TGCCCGTCGG TTCTAAGTAC 
    CCTTCTGAGG GCAGCGGTTG GGAGATAGAA AGTGCTAAAT AGCTGAAGAT 
    TTACCACTAC AAGGAAAGCA GGAATACTGG TTGGAAATGC AATTTCCAAG 
    GGGCACTCCT GCAAATTATT AAAGGGAAGT ACTGCTCACC AAAAGGCAGT 
    CTTTCGTAAC CTATATTCAA TAGGAAAAAT GAGAAATTAA TGGGAAAAAT 
    GTACAGCAAT AATAAAATTC AAGTGACAGT ATATACCATA GAAGTGCATT 
    AAGGTCCCTG CAAAAACAAA AGAAAAAGAA GTGCCTCAAG GAACTCCGGG 
    AAAACAGAAG AAGAGGATGG TCCATGAGCA ACCTATGATT TGAGAAACAA 
    AACCAGTTAG TATGTTCTTA TTTCTAGGGA ACCATAATAG CATTTCTTTA 
    CTTACATAAG AATTGAGTTT GTGCATTAGG CTTGTTCACT GTGTACTCCA 
    GCCACTGTAT CCGACTTCCT TGTTGTTGAC AACATTTGTG ACTACCTCAT 
    GAGTAATATC ATGTACTTGC TGGTGTGTGT ACAGTGACTG TCTCCCATTG 
    TTTAGGATGT TGCAGGATGG TGCACATGTT GAATCAACCC GATCTCTATC 
    T

    Gene models with high sequence identity

    1. AT5G19000.1 [+] show detail - BTB-POZ and MATH domain 1
      E-value: 2e-61; Score: 234.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan BTB/POZ-like 18.162
    ProfileScan MATH 9.243
    superfamily BTB/POZ fold 4.7e-31
    superfamily TRAF-like 8.8e-11
    HMMPfam BTB/POZ 8.2e-23
    HMMSmart BTB/POZ-like 6.1e-22
    HMMPanther BTB-RELATED 2e-71
    HMMPanther Kelch related 2e-71
    Gene3D BTB/POZ fold 8e-27

    See the detailed result >

    AT5G19000.1

    Model type
    Protein coding
    Short Description
    BTB-POZ and MATH domain 1
    Computational Description
    BTB-POZ and MATH domain 1 (BPM1); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 2 (TAIR:AT3G06190.1); Has 5705 Blast hits to 5596 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 3900; Fungi - 59; Plants - 1504; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR