K22133

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22133

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22133

Determination of introduced cDNA(s)

  • J013022I17 - Rice Full-length cDNAs - Original: J013022I17

    full reading [+] show sequence

    Nucleotide sequence: J013022I17 - full reading 
    GGTTAAGCTT TCTACAATAG CCACTGCATC CTTCTGTTCA GAGGAAGCCA 
    GGATGAGAAT CCCAGCATCA CGAAATGGAA ACACCCCTAT TACCACGTTG 
    TCCGGTATTT CCATCTTCGT TTCCTTCCTA CCATAGCAAG CAATTTGTCT 
    AAAACTACCT GTCCTTTCAT CCTTGGATTC TCACCACCAA TGGTTTGTGT 
    TCAGTGAATG ATCTAACCAT GCGTCATTCA CAGTTCTTCG TTCTTGTCTT 
    TACTCTCATG ATTTTCTCTT TGTTCCAGAC TTGCCAATCC AACCATGAGC 
    ATGTCGTTTG CTCTGAATGC TGAGCCAAAC ACTGTGTGGT ATAATAACCG 
    CTCCCTCCTC CAGAATACAT TTTCAGATGA CAATTTCTTG ATGCGCATCT 
    TCCTCCCTCA TGACATTGCA GTTCCAAGTA TAAATGATAG CATCGTTCCT 
    TCATTTGCTT GCGGGTTCTT CTGTGCAGGA TCTGCAACCA GCTGTGATGC 
    CTACATTTTT TCCATCTTCT TTGTCTATGT TAGCACCGAT TTCAGTCAGC 
    GGCTGCGGTG GCCCGAGATA GTCTGGTTTG CCAACCGTGA TCATCCAGTT 
    GGAGAGAATG CTACTGTTCA ATTTACTGAA CTTGGGGATT TAGTGCTCTA 
    TGATGCAGAT GGAACACTTG TTTGGTCCAC CAATACAGCG AACAAGTCTG 
    TTGTCAGCAT GAACCTTACA GGGTCAGGAA ATCTGGTATT GTTAGACCGC 
    ACAAATGTGG AGGTCTGGAG ATCCTTCGAT CACCCAACTG ACACGCTTGT 
    CATTTCTCAG ACACTACAGA TGGGTCAGAA GCTTGTGGCA AGAACTTCGT 
    CGACAAACTG GACTGAGGGA AAATTGTACC TCACCGAGTC ACCGTCCTCG 
    CTGATGGCAT GTATGCATTT GCATTGCATA CTACCGGAGC CCCACTGGTG 
    GAACTGTTGC AACAAACATG TCAGCTTACG TTGCACTCAA GAATGGTAGC 
    CTTGAGGTGT TCACTTCTTT CCAGGAGACA AAGGCGCCTG ATTACCACAT 
    CCAGCTGCCT GAGAATTCCT TTGGGCTGGA GTTTGCAAGG CTAGATTGGG 
    ATGGGCACAT GAGACTATAT CAGTGGATCA ATTACAGTGC CTGGGTGCCT 
    TCAGATATTT TTGACATAAC TGACCCTTGT GCTTATCCTC TAGCTTGTGG 
    AGAGTATGGT ATTTGCTCGC ATGGACAGTG CAGCTGCCCA GATGTAGCCA 
    TTGGGCAATC AGGATTGTTT GAGCTGGTCG ATGCCAAGGG AGTTAACCAT 
    GGCTGCTTTC TGACGTCTTC ATTGACTTGT GGGTCAGCCA GGAAGACTAG 
    GTTTCTTGCT GTTCCCAATG TCACCCACTT CAATTTTGTC TACAATTGGA 
    CAACAAATGA AGATCATTGC AAACTATCAT GCATGGATGA TTGTTCTTGT 
    CGGGCTTCAT TTTTCCAGCA TAAGGACATT TCTTCTGGTT TCTGTTTTCT 
    TGCATTCAAC ATATTTTCGA TGATAAATTT TAGTGCACAA AGTTATTCAA 
    GTAACTTTAG TTCTTCTGCT TTTCTCAAAA TTCAGGACTC TACCCACAAA 
    TCCTTATTAT CTAAAGAGAA AAGAGCAATC GTTTTGGTTG CTGGTTCTTT 
    GAGTTTTGTT ACTTCAGTTA TTGTTGCAGT GCTTATAGTT CTGAGAAGAA 
    AGAGAGACAA ACCATTAGAA GATGAATATT TTATTGATCA GCTTCCAGGG 
    CTACCCACAA GATTTTCTTT TGTGGATTTG AAATCAGCAA CAGGAGATTT 
    CTCAAGAAAG ATTGGGGCAG GGGGATTTGG TTCTGTTTTT GAAGGACAGA 
    TCGGTGATAA GCATGTTGCT GTCAAGAGAT TGGATAGCAT AGGTCAGGGG 
    AAAAGAGAAT TCTTAGCAGA GGTTCAGACA ATTGGAAGCA TTAACCACAT 
    ACACCTGGTG AGGCTAATCG GATTTTGTGT TGAAAAAACT CATAGGCTTC 
    TTGTCTATGA GTACATGCCT AATGGATCTT TGGATAAATG GATTTTTCAG 
    AATCACCAAG CTGATCCACT TGATTGGAAA ACCAGATTGA AGATTATCTC 
    TGATGTAGCC AAGGCATTAG CTTATCTTCA TAGTGATTGC CGACAAACAA 
    TAGCTCATCT GGACATCAAG CCAGAAAATA TACTTTTGGA TGAGGTGTTC 
    ACTGCAAAGA TATCTGACTT TGGACTTGCC AAACTGATTG ACCGTGAGCA 
    AAGCAGTGTC ATGACTAGAT TAAGAGGCAG ACTGGGTTAC TTAGCCCCTG 
    AGTGGTTGAC ATCTGTGATC ACTGAAAAGG TTGATGTGTA TAGCTTTGGC 
    GTTGTGATAA TGGAAATTTT ATGCAGCAGA AGGAATTTGG ACTACTCGCA 
    GCCTGAAGAA AGCTGCCATC TCATCAGCAT GTTGCAGGAG AAGGCCAAAA 
    ATAACCAGTT GATGGACCTT ATCGATCCAT GTTTCTTTGA TATGGAATTA 
    CATATGGATG ATGTTTTATG AATGATGAAT TTAGCAATGT GGTGCTTGCA 
    AGTCGATAAC AATAGAAGGC CTTCCATGTC CATGGTGGTC AAAATCCTGG 
    AAGGTACCAT GGATGTTGAA ACTGAACTTG ATTTTGACCT GGTAAACATA 
    GACCCGATGG TAGTAGCACA TCGAGCAGCT CAAAGGAACA GTATTACTTT 
    GCAGGTAGAC TCTGTCCTTT CAGGGCCAAG ATGAAATACA AGGAGCTCAA 
    ATATATTCTT CAAAGATATC AAGCTCAAGA TTGAAAACAC GTACTCCTGT 
    TTTCCTATAC TATGGCATTT AGATAAACAA AGATGTAGAC ATGTAGTGAT 
    GTACTATAGT GATAATGATT TTTTTTCTGT TC

    Gene models with high sequence identity

    1. AT4G32300.1 [+] show detail - S-domain-2 5
      E-value: 3e-95; Score: 347.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Curculin-like (mannose-binding) lectin 2.9e-11
    HMMSmart Serine/threonine-protein kinase domain 6.8e-33
    HMMSmart Tyrosine-protein kinase, catalytic domain 9e-17
    superfamily Curculin-like (mannose-binding) lectin 3.7e-25
    superfamily Protein kinase-like domain 5.1e-71
    HMMPanther S-RECEPTOR KINASE 6e-10
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 6e-10
    HMMPanther S-RECEPTOR KINASE 1.4e-129
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.4e-129
    ProfileScan Curculin-like (mannose-binding) lectin 14.333
    ProfileScan Protein kinase, catalytic domain 36.852
    HMMPfam Curculin-like (mannose-binding) lectin 9.8e-25
    HMMPfam Serine/threonine-protein kinase-like domain 8.1e-47
    Gene3D no description 4.3e-19
    Gene3D no description 7.6e-40
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0

    See the detailed result >

    AT4G32300.1

    Model type
    Protein coding
    Short Description
    S-domain-2 5
    Computational Description
    S-domain-2 5 (SD2-5); FUNCTIONS IN: carbohydrate binding, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT5G35370.1); Has 119450 Blast hits to 117822 proteins in 4317 species: Archae - 101; Bacteria - 12813; Metazoa - 43689; Fungi - 10139; Plants - 34770; Viruses - 395; Other Eukaryotes - 17543 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR