K22143

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22143

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22143

Determination of introduced cDNA(s)

  • J033128J01 - Rice Full-length cDNAs - Original: J033128J01

    full reading [+] show sequence

    Nucleotide sequence: J033128J01 - full reading
    TGCTTTGAGC CAAAAAGGTT AGAGCTTTTG TGTTCTTCCC CCACAAATAT 
    CCCCTAGTGC CTTTTGTTTG GCCGTGGTGT GGAAAAGCAT ATGAATGGGG
    GAGCATCTCA ATTGGCATAC TGCTGTTGCC CCCCAGCTTA GCTATCCCTT
    TCCATCCCTG CAAGAACCCT TCTTTATAGA TCTGTGCCCT TGCTGTTCAT
    GGAACCCTGT GATTGAGGGG TTTCCTCATT TGGTCTCTCA CTCGCGGTGT
    AAACAAAGTA TATGCTCCAA GTAAGCTGCT ACTTTTAGCT GCTTCTCTGA
    TTCTTGAGTG ATCTCCAAGT GCAGAAGGAG AGGGAGGAGG AGATGGGGGA
    GTGCGGCGGC GGCGAGTACA GGTGCTGGGA GGAGCTTCTG CCGGACGCGC
    TGGGGCTCGT CTTCCGGAAC CTGCCGCTCC GGGAGGTGCT GACGGTGGTG
    CCACGGGTGT GCAAGTCGTG GAGCCGGGTG GTGGCCGGGC CGTACTGCTG
    GCAGGAGATC GACATCGAGG AGTGGCGGCA GCAGCAGGGC AAGCCCGAGC
    AGCTCGTCCG CATGGTGGAG ATGCTCGTCG CACGCAGCTG CGGCTCCTGC
    CGCCGCATCA GCGTCTCCGG CCTCCCCGGC GACCCGCTCT TCTCCTTCAT
    CGGAGACCAT GCACGGGCAC TGAGGACGCT GGAGATTCCA CGGAGCGAGA
    TCAGCGACGC GGCGGTGGAG AGCGTGGCGC CGAGGCTGCC CAACGTGACG
    TTCCTGGACA TCAGCAGCTG CACCAAGATC GGGGCGCGCG CGCTGGAGGC
    GTTCGGCAAG AACTGCAAGT CGCTGGTGGG GCTCCGGCGG GTGATGCACC
    CGACGGACGT CGCCGGCAAG GCGTGCCAGC GCGACGAGGC GCGCGCCATC
    GCCTGCACCA TGCCGAGGCT CCGGCACCTG GAGATGGGCT ACATGGTGAT
    CGCGACGGAT GCGGTGCTCG ACATCCTCGC GCGGTGCCGC GAACTCCGGT
    TCCTCGACCT CCGCGGCTGC TGGGCCGTCG ACGACAAGTT CCTGCAGGAG
    AGGCACCCGG GGCTGAGGGT GCTCGGCCCC GGCGTCGACG ACTGCTTCGA
    GAACAGCTAC CTGGAGGAGT GCTCCGACTA CTCCGACGAC TCCTCCATCT
    ACTCGTGGGA GCTCATGGAG GACGACGACG ACGACTACTA CGCCGTCGGG
    AGCGACGACG AGGCCATTTG GGACGACGGC CAGGGCCTCG AGAACCTGGA
    GGTCAGGTTC TACGGCGGCG GCTTCAGCGA GAGCTATGCT GGCTTCGATT
    GGCCACCATC ACCATGACCA TGAGAGCAGC TCAGCTCAGC TCAGTCCCTG
    ACCTCACTGT CCTTGCTCTT CCTCTCGAGC CGTGTACCTA AGCTTGCAGT
    TGCAGTCTCG CAGATGTGTT GTTGTACTCT GTGTGTGTGC GCGTGTGCCA
    GTGTGTCATC AGCATCACTA GCTTGCAGTG CAGATATGTG TGAGTGAACT
    TCTACGGCTA GTTGTTACTA CTACTACATC CAGATGTAAA CTTTGGTGTT
    TACATG

    Gene models with high sequence identity

    1. AT4G08980.5 [+] show detail - F-BOX WITH WD-40 2
      E-value: 1e-73; Score: 274.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther N7-RELATED PROTEIN 1.2e-38
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 1.2e-38
    superfamily RNI-like 1.1e-18
    Gene3D no description 1.1e-37

    See the detailed result >

    AT4G08980.5

    Model type
    Protein coding
    Short Description
    F-BOX WITH WD-40 2
    Curator Summary
    Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response.
    Computational Description
    F-BOX WITH WD-40 2 (FBW2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process, posttranscriptional regulation of gene expression; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05460.1); Has 1165 Blast hits to 1048 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 539; Fungi - 16; Plants - 571; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR