K22147

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22147

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22147

Determination of introduced cDNA(s)

  • J033150L19 - Rice Full-length cDNAs - Original: J033150L19

    full reading [+] show sequence

    Nucleotide sequence: J033150L19 - full reading
    GAGCTTAAGC CTCGAAGAGA TGGCTATGGC AATGGCGGCT TCGCTCGCGG 
    CGCACCACCA CCTCGCCGGC GGCGGCCTCC TCCCCACGCC ACGAGCGAGC
    GGGAGGAACG GCCGCAGCGG CATCACCATA TCCATGAGAG CGCAGAGCGG
    TGACTCTGGG AGTGGGAAGG GAGACGGCGG AGACGGGCGA GTCAGCGGTC
    GGCGGCGAGT GTGGCGTCGC CGGAAACTGG TATGCTCTCT GGCCGAACTA
    AGGGAGTAGG TCTCCTCCTA TATCTCCGCG TGGTTGATTG TTTTGGACGG
    AACTAGGACG GCATGGACGA CGTTCTCGCT GAATAATCTG CGAGCCTCCG
    TTTTGGAATG CGCATGCCAT TTGCCTTTCT TTTTACATGA GATTGGGAAG
    GTAGAGCGGG GTCAGTTGTG TTCAGGAGAG AGAAGCGTCG GATGTGTCCA
    TTACTCCATT ATCATGTGGT ATCAAACCTC GGAAACCCTT TTTTGAGTTG
    CGAGGATTAT GTGATGCGAT ATTTCATTTG CACCTGTTTT GGTTCATTAT
    GGAGCTCTTG CTTGCATAGA TTTTCGTTTA AAGGAATCCT GAGGCTTCAT
    GGGGGTGGGA TAGATGAAAG CATCATTTTT TTTTTGGCCA AATAAGGCAA
    TTATTTTAGG TTGTTTCTAA ACAATAAGTC ACAAATTGTT GGTACAAGAA
    ACTTCCTTTG CCCTTGTAGT GTTTTTCTCA TGTGATTCCA TGACATTTGC
    TATTCAGTAT TATGCTCAAA ATATGAAGTC ACAGATTGTT AGTATGATGC
    AGCATGCTCT GGTTGTCCTT CATCTTTGTA GTGTGGCTCT TGTGGTTACA
    TTGGTGGCTG CTAGCAGTGT CAGAGCATGA GACAAACACA AAAAAGTATT
    CAATTATCCA AATCATTTTA AAGTTTTAAA TAAACATCAA CTGATAATTA
    GAATTGGACA TTGTTGTTGT TCATCGTTAG TTCACATATA TCATATCAGA
    GTAACTGTAC GTATGTATTA ACTCTATTAA GTATTCCAAA ACCACTGTAA
    ACACAGTACT AGCATAAAAG GGGAGCATGA AAAATTGAAG GGCTTATTTG
    GTTTGGTACC CTACCAAAAT TTTAGTAGTG CCAAAACCTA GGCAAGTTTT
    GGCACTACCA AGATTTTGGT AGGGTAGCAC AGTAAATATG AGTGTTTGGA
    TTAGTGCCAA TGAAGTGCCA AATTTTTATG GGTCAATTTC CATTTGGATT
    GGTACCAATG AAGGATCACC AAATTTTTTT TTTGTGCTGT AATAGCTTTG
    GTACTATTTG CTGCAGAATA AGCAGAGCGG TGAGGCGGCC AGCCGAGGAG
    ACGAGTAGTG GCTGGGTATT TATTGAAGTA GAGAAAAGAT GAAGCCCTAG
    CTTTTTTTTT TTTGAACAGA AGTGCGTGAA CTAGTTTGGG CTGAGCCAAG
    TTGTGTAGCC TGCTTCTGGG CGCTTCCGGC GGGTGACGGA TGGCTGCCAA
    TTCCAGCCTA TGCCTTGCTA CCAAATTAAG CCTAGGCACT ACCAGTGATT
    TGGTCACAAT CCAAACTCTC AGTGGTACTG TTCTGATAAC CAAAATATTG
    GTATGGCCCA GTTTTGATAG CAAACCAAAA CGGCCCGAAA AGTAGCGCTG
    ATTGAAGGCA CGCTATTCTT TTGGTCAGAT TATTAAAATC CACAATTATG
    TTTTTGTAAC TATAGGTTGC TACCTTCTAT GTGTATTAGC AAGCTATAGG
    CAAGACAGAC ATCTTCACAT CTTTTGTAAG GGACCTTTTC TTGAACTTGA
    AACTAGAAAA CACATGATCA CCACTAGCTC GACCAAAAAA ATGAGCTAGT
    TTGTTACACA TGGAAAGTGC CTCATGTGGA AGAATGAAAT AAAGAGCTGT
    AGAATTCAGT AATTTAAATA GGACAATAAT AATGCATAGA TTCAAGAATA
    CATGTCTACG TTCAACCTTT TGAGCAAGGG AGACTGGAAC TGTGCCCCAC
    CACTTGCTAT TAGCTTGTCA GCCTTCGTTT ATTTTATGTC AACCAAGTAT
    CATATTCAGC ATGGCATGAC CATGCCCAAC AGTTAAGCAG GCTGCCAGGC
    AGTTGTATGC CAGCCATGTC TTCATTGTTT GCATCACTAT TGAGCATGTC
    ACCACATAAA AACATTCGAA AAGGTGACAT TGGGTGTTGT TGCCATGCTT
    TACTTCACAT TCTTTTCTGA TTTCCATGTA TATAATTGAT ATATGCGTCC
    TTGCAGACCA AAGAGGATGA CATGTTGCGG TACAAGTTGA AACGTGTCCC
    TTTCTTAGAA GAGAAAGTGA GAAAAGTTAG GGAAAATGGG AAGATCATAT
    GCTTGGACAT CAACCAGCTG ATGTTATCTG AAGAGAATAG ATTTGCTTTC
    ACAATAGAGG TGGCTGAGGA AGCTAACTCT TATCTTGAAA AGAACAGGCA
    TGAGTATGGA CTGAAAAAAC CTATACTACA TGTGCTCAGT GACCGCATGA
    ATGAAGCTGG GTTTTCTCGG CCGGAAGGCT ACCTTTATCC TTATCCTATT
    AAGCCTGGTC CTTATTTTAT T

    Gene models with high sequence identity

    1. AT5G24314.2 [+] show detail - plastid transcriptionally active7
      E-value: 1e-30; Score: 132.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G24314.2

    Model type
    Protein coding
    Short Description
    plastid transcriptionally active7
    Computational Description
    plastid transcriptionally active7 (PTAC7).
    Link
    InterPro Scan - TAIR
  • J023001P21 - Rice Full-length cDNAs - Original: J023001P21

    full reading [+] show sequence

    Nucleotide sequence: J023001P21 - full reading
    GATGGAGGCA GAGCACCCGC ACCAGATCAC ATACACCACC ACCACCACCA 
    CCTCCACCTC ATCCCTCTGC CCGCGCCGCA GGAAGAGAGG AGACGACGAG
    GCGGCGCACC ACCTCGTGTT CCCCATGGAT CTCGACTCGG CCGCGGCGGC
    GGCTGCGGCG GCGGCGCACC ACCAGCAGCA GCAGCAGCAG ACCACGTCCC
    AGGACAAGCT GAAAGCATTG GCTTATGAGT ACGGTCATGA GTTCCGAGTA
    TTTTCAAGTG TAACATTTGA GTCAATGACT AGCAACTTGC CCGCAGCAGA
    TCAGGAGGAA GATGATGACT TTTATGAGCT TCAGCCTGCT GACTATTTCA
    ACTTGGTTTC GAACAGAATA GGAGAACAAT CGAAAGTTTT GAAGACTCGT
    AAAATGCGTG AAGCAGAACT TGCTGCCCAA CGAGCAAAGA TAAAAAAGGC
    AGTAATGAGG GTGCGATTCC CTGATGGATA CATACTTGAG GCCGATTTTC
    ATCCGTCAGA AACAGTTCAA AGTCTGATGG ATTTTCTGAA GAAAGTAATC
    TCTAGACCAG ACCTGCCATT CTATCTCTAT ACAGTTCCAC CAAAGAAGCG
    GATAAAAGAC ACTTCACTGG ATTTCTACAC AATTGGTTTT GTTCCTGGGG
    CTAATGTCTA CTTCTCTTAT GATCTGCCGG AAGGCTCAGA GTTAAATACA
    GACAGTGTAA AATCAGGACC TTATCTCCGT GAAGAAATTC GGATGTTGGA
    TGGACTACCA ATTGTCCAAG AACCTGTGCA CCAACCAATT GATTCTACTA
    TGAACTCTTC TTCTGCTCAT CAATCTGATG TGTCTCAATC AGATTTTGCA
    CCGCCAGCAA ACAAGAAACC AGCTAAACCA AAGTGGTTCA AAAGGTGATG
    ATGAGGTGAG ACAGTCAGGG CGCCAAGAAT GCACCACCAG AGGACGACTC
    TAATGTAGGG GGATAGAGAG TGAAAGCATG ACAATAATGG GTTGCTGTTG
    GCTTTCTTGA TGGATGGATA CACATTGTAA AATGAAACTT TCCAAAGAAA
    TTTCACGAGT GCTGCAGAAT GATTTTTTGC GTCTGATAGC ACTGCATTAC
    ACTGTACACT CCGTTGCTAA CAAAGCCTCC CTTTTCCTGA GTGCATATGG
    CTGGGGGTGT TTGGTTGATT GCTTCACTTT GTCACGCCAC ACTTCAGTCA
    TGCCACAGTT TGTAGATGTG TGTTTGTTTC AATGCCACAG TTGTGTCATG
    CCACACTTTT CT

    Gene models with high sequence identity

    1. AT3G27310.1 [+] show detail - plant UBX domain-containing protein 1
      E-value: 2e-48; Score: 190.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam UBX 1.7e-08
    superfamily Ubiquitin-like 5.6e-17
    ProfileScan UBX 12.685
    HMMPanther gb def: CG31188-PA, isoform A (Cg31188-pc, is 7.7e-09
    HMMPanther UBX-RELATED 7.7e-09

    See the detailed result >

    AT3G27310.1

    Model type
    Protein coding
    Short Description
    plant UBX domain-containing protein 1
    Curator Summary
    encodes a protein that contains a UBX domain and regulates AtCDC48 by inhibiting its ATPase activity and by promoting the disassembly of the active hexamer. Phenotypic analysis of pux1 plants revealed that the loss of PUX1 accelerated the growth of various plant organs including roots and inflorescence shoots. AtCDC48 and SYP31 colocalize at the division plane during cytokinesis and to interact in vitro and in vivo.
    Computational Description
    plant UBX domain-containing protein 1 (PUX1); CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 392 Blast hits to 391 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 47; Plants - 86; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR