K22147

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22147

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22147

Determination of introduced cDNA(s)

  • J033150L19 - Rice Full-length cDNAs - Original: J033150L19

    full reading [+] show sequence

    Nucleotide sequence: J033150L19 - full reading 
    GAGCTTAAGC CTCGAAGAGA TGGCTATGGC AATGGCGGCT TCGCTCGCGG 
    CGCACCACCA CCTCGCCGGC GGCGGCCTCC TCCCCACGCC ACGAGCGAGC 
    GGGAGGAACG GCCGCAGCGG CATCACCATA TCCATGAGAG CGCAGAGCGG 
    TGACTCTGGG AGTGGGAAGG GAGACGGCGG AGACGGGCGA GTCAGCGGTC 
    GGCGGCGAGT GTGGCGTCGC CGGAAACTGG TATGCTCTCT GGCCGAACTA 
    AGGGAGTAGG TCTCCTCCTA TATCTCCGCG TGGTTGATTG TTTTGGACGG 
    AACTAGGACG GCATGGACGA CGTTCTCGCT GAATAATCTG CGAGCCTCCG 
    TTTTGGAATG CGCATGCCAT TTGCCTTTCT TTTTACATGA GATTGGGAAG 
    GTAGAGCGGG GTCAGTTGTG TTCAGGAGAG AGAAGCGTCG GATGTGTCCA 
    TTACTCCATT ATCATGTGGT ATCAAACCTC GGAAACCCTT TTTTGAGTTG 
    CGAGGATTAT GTGATGCGAT ATTTCATTTG CACCTGTTTT GGTTCATTAT 
    GGAGCTCTTG CTTGCATAGA TTTTCGTTTA AAGGAATCCT GAGGCTTCAT 
    GGGGGTGGGA TAGATGAAAG CATCATTTTT TTTTTGGCCA AATAAGGCAA 
    TTATTTTAGG TTGTTTCTAA ACAATAAGTC ACAAATTGTT GGTACAAGAA 
    ACTTCCTTTG CCCTTGTAGT GTTTTTCTCA TGTGATTCCA TGACATTTGC 
    TATTCAGTAT TATGCTCAAA ATATGAAGTC ACAGATTGTT AGTATGATGC 
    AGCATGCTCT GGTTGTCCTT CATCTTTGTA GTGTGGCTCT TGTGGTTACA 
    TTGGTGGCTG CTAGCAGTGT CAGAGCATGA GACAAACACA AAAAAGTATT 
    CAATTATCCA AATCATTTTA AAGTTTTAAA TAAACATCAA CTGATAATTA 
    GAATTGGACA TTGTTGTTGT TCATCGTTAG TTCACATATA TCATATCAGA 
    GTAACTGTAC GTATGTATTA ACTCTATTAA GTATTCCAAA ACCACTGTAA 
    ACACAGTACT AGCATAAAAG GGGAGCATGA AAAATTGAAG GGCTTATTTG 
    GTTTGGTACC CTACCAAAAT TTTAGTAGTG CCAAAACCTA GGCAAGTTTT 
    GGCACTACCA AGATTTTGGT AGGGTAGCAC AGTAAATATG AGTGTTTGGA 
    TTAGTGCCAA TGAAGTGCCA AATTTTTATG GGTCAATTTC CATTTGGATT 
    GGTACCAATG AAGGATCACC AAATTTTTTT TTTGTGCTGT AATAGCTTTG 
    GTACTATTTG CTGCAGAATA AGCAGAGCGG TGAGGCGGCC AGCCGAGGAG 
    ACGAGTAGTG GCTGGGTATT TATTGAAGTA GAGAAAAGAT GAAGCCCTAG 
    CTTTTTTTTT TTTGAACAGA AGTGCGTGAA CTAGTTTGGG CTGAGCCAAG 
    TTGTGTAGCC TGCTTCTGGG CGCTTCCGGC GGGTGACGGA TGGCTGCCAA 
    TTCCAGCCTA TGCCTTGCTA CCAAATTAAG CCTAGGCACT ACCAGTGATT 
    TGGTCACAAT CCAAACTCTC AGTGGTACTG TTCTGATAAC CAAAATATTG 
    GTATGGCCCA GTTTTGATAG CAAACCAAAA CGGCCCGAAA AGTAGCGCTG 
    ATTGAAGGCA CGCTATTCTT TTGGTCAGAT TATTAAAATC CACAATTATG 
    TTTTTGTAAC TATAGGTTGC TACCTTCTAT GTGTATTAGC AAGCTATAGG 
    CAAGACAGAC ATCTTCACAT CTTTTGTAAG GGACCTTTTC TTGAACTTGA 
    AACTAGAAAA CACATGATCA CCACTAGCTC GACCAAAAAA ATGAGCTAGT 
    TTGTTACACA TGGAAAGTGC CTCATGTGGA AGAATGAAAT AAAGAGCTGT 
    AGAATTCAGT AATTTAAATA GGACAATAAT AATGCATAGA TTCAAGAATA 
    CATGTCTACG TTCAACCTTT TGAGCAAGGG AGACTGGAAC TGTGCCCCAC 
    CACTTGCTAT TAGCTTGTCA GCCTTCGTTT ATTTTATGTC AACCAAGTAT 
    CATATTCAGC ATGGCATGAC CATGCCCAAC AGTTAAGCAG GCTGCCAGGC 
    AGTTGTATGC CAGCCATGTC TTCATTGTTT GCATCACTAT TGAGCATGTC 
    ACCACATAAA AACATTCGAA AAGGTGACAT TGGGTGTTGT TGCCATGCTT 
    TACTTCACAT TCTTTTCTGA TTTCCATGTA TATAATTGAT ATATGCGTCC 
    TTGCAGACCA AAGAGGATGA CATGTTGCGG TACAAGTTGA AACGTGTCCC 
    TTTCTTAGAA GAGAAAGTGA GAAAAGTTAG GGAAAATGGG AAGATCATAT 
    GCTTGGACAT CAACCAGCTG ATGTTATCTG AAGAGAATAG ATTTGCTTTC 
    ACAATAGAGG TGGCTGAGGA AGCTAACTCT TATCTTGAAA AGAACAGGCA 
    TGAGTATGGA CTGAAAAAAC CTATACTACA TGTGCTCAGT GACCGCATGA 
    ATGAAGCTGG GTTTTCTCGG CCGGAAGGCT ACCTTTATCC TTATCCTATT 
    AAGCCTGGTC CTTATTTTAT T

    Gene models with high sequence identity

    1. AT5G24314.2 [+] show detail - plastid transcriptionally active7
      E-value: 1e-30; Score: 132.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G24314.2

    Model type
    Protein coding
    Short Description
    plastid transcriptionally active7
    Computational Description
    plastid transcriptionally active7 (PTAC7).
    Link
    InterPro Scan - TAIR

  • J023001P21 - Rice Full-length cDNAs - Original: J023001P21

    full reading [+] show sequence

    Nucleotide sequence: J023001P21 - full reading 
    GATGGAGGCA GAGCACCCGC ACCAGATCAC ATACACCACC ACCACCACCA 
    CCTCCACCTC ATCCCTCTGC CCGCGCCGCA GGAAGAGAGG AGACGACGAG 
    GCGGCGCACC ACCTCGTGTT CCCCATGGAT CTCGACTCGG CCGCGGCGGC 
    GGCTGCGGCG GCGGCGCACC ACCAGCAGCA GCAGCAGCAG ACCACGTCCC 
    AGGACAAGCT GAAAGCATTG GCTTATGAGT ACGGTCATGA GTTCCGAGTA 
    TTTTCAAGTG TAACATTTGA GTCAATGACT AGCAACTTGC CCGCAGCAGA 
    TCAGGAGGAA GATGATGACT TTTATGAGCT TCAGCCTGCT GACTATTTCA 
    ACTTGGTTTC GAACAGAATA GGAGAACAAT CGAAAGTTTT GAAGACTCGT 
    AAAATGCGTG AAGCAGAACT TGCTGCCCAA CGAGCAAAGA TAAAAAAGGC 
    AGTAATGAGG GTGCGATTCC CTGATGGATA CATACTTGAG GCCGATTTTC 
    ATCCGTCAGA AACAGTTCAA AGTCTGATGG ATTTTCTGAA GAAAGTAATC 
    TCTAGACCAG ACCTGCCATT CTATCTCTAT ACAGTTCCAC CAAAGAAGCG 
    GATAAAAGAC ACTTCACTGG ATTTCTACAC AATTGGTTTT GTTCCTGGGG 
    CTAATGTCTA CTTCTCTTAT GATCTGCCGG AAGGCTCAGA GTTAAATACA 
    GACAGTGTAA AATCAGGACC TTATCTCCGT GAAGAAATTC GGATGTTGGA 
    TGGACTACCA ATTGTCCAAG AACCTGTGCA CCAACCAATT GATTCTACTA 
    TGAACTCTTC TTCTGCTCAT CAATCTGATG TGTCTCAATC AGATTTTGCA 
    CCGCCAGCAA ACAAGAAACC AGCTAAACCA AAGTGGTTCA AAAGGTGATG 
    ATGAGGTGAG ACAGTCAGGG CGCCAAGAAT GCACCACCAG AGGACGACTC 
    TAATGTAGGG GGATAGAGAG TGAAAGCATG ACAATAATGG GTTGCTGTTG 
    GCTTTCTTGA TGGATGGATA CACATTGTAA AATGAAACTT TCCAAAGAAA 
    TTTCACGAGT GCTGCAGAAT GATTTTTTGC GTCTGATAGC ACTGCATTAC 
    ACTGTACACT CCGTTGCTAA CAAAGCCTCC CTTTTCCTGA GTGCATATGG 
    CTGGGGGTGT TTGGTTGATT GCTTCACTTT GTCACGCCAC ACTTCAGTCA 
    TGCCACAGTT TGTAGATGTG TGTTTGTTTC AATGCCACAG TTGTGTCATG 
    CCACACTTTT CT

    Gene models with high sequence identity

    1. AT3G27310.1 [+] show detail - plant UBX domain-containing protein 1
      E-value: 2e-48; Score: 190.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam UBX 0.000000017
    superfamily Ubiquitin-like 5.6e-17
    ProfileScan UBX 12.685
    HMMPanther gb def: CG31188-PA, isoform A (Cg31188-pc, is 0.0000000077
    HMMPanther UBX-RELATED 0.0000000077

    See the detailed result >

    AT3G27310.1

    Model type
    Protein coding
    Short Description
    plant UBX domain-containing protein 1
    Curator Summary
    encodes a protein that contains a UBX domain and regulates AtCDC48 by inhibiting its ATPase activity and by promoting the disassembly of the active hexamer. Phenotypic analysis of pux1 plants revealed that the loss of PUX1 accelerated the growth of various plant organs including roots and inflorescence shoots. AtCDC48 and SYP31 colocalize at the division plane during cytokinesis and to interact in vitro and in vivo.
    Computational Description
    plant UBX domain-containing protein 1 (PUX1); CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 392 Blast hits to 391 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 47; Plants - 86; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR