K22150

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22150

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22150

Determination of introduced cDNA(s)

  • J033072E11 - Rice Full-length cDNAs - Original: J033072E11

    full reading [+] show sequence

    Nucleotide sequence: J033072E11 - full reading 
    GGCAGGTTGG TCGGAACCCT ATGCCTGACC TCCGCCTCCG ATCCTCCGCC 
    CTGAGCCGCG CGCCGCCGCC GCCGCCGCTG CAGGCTCCTT GTTCCTCGCC 
    GGTTTGCTCG TATCGCTCCG TACAACGACG CACCGGTGCT AGAGAAGACA 
    ACAGCACAGG GAGGCGACAA AGGTGGCATT CTGTTCTCCA AAGAGCAGAA 
    AACATGGTTA ATGCAATAAA GGGGTTGTTC ATCTCCTGCG ATGTACCGAT 
    GGCACAGTTC ATTGTTAATC TGAATGCTTC AATGCCCGCT TCGGACAAGT 
    TCATCCTGCA CATGCTTGAC CCGACACACA TGTTTGTGCA GCCTCATGTG 
    GCGGAGATGA TCAGAAGTAA GATTTCAGAG TTCAGAGACC AAAACAGCTA 
    CGAGAAGCCA ACATGAAAGA TCACTCTACC CCACAATTCC TGTGTGTGCA 
    CCATTGAAAA GATACCAACG CTTGTCTATG GTTTATAGTT TTTCTTTAGA 
    TAGTCTATGG TTTAGTATAG TTGTGTGTGA TGTGACTTGT GAGCGTCATG 
    TGCCACTCAT CAATCATGAT GATGTTCAAG AATGATAAAC TTGCAGTATC 
    AGAAAATGTT GTGGCTTATG ACTTATTTGT CTTCAGTGAT AGTATTAATC 
    ACCTGTCCAT TTGGTAGCGT TGGAACATTG AGAGACAGCC TATTTCTGAA 
    GAATCAGTTA ACTT

    Gene models with high sequence identity

    1. AT1G12400.1 [+] show detail - Nucleotide excision repair, TFIIH, subunit TTDA
      E-value: 9e-28; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Nucleotide excision repair, TFIIH, subunit TTDA 7.6e-22
    HMMPfam Nucleotide excision repair, TFIIH, subunit TTDA 5e-24

    See the detailed result >

    AT1G12400.1

    Model type
    Protein coding
    Short Description
    Nucleotide excision repair, TFIIH, subunit TTDA
    Computational Description
    Nucleotide excision repair, TFIIH, subunit TTDA; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide excision repair, TFIIH, subunit TTDA (InterPro:IPR009400); BEST Arabidopsis thaliana protein match is: Nucleotide excision repair, TFIIH, subunit TTDA (TAIR:AT1G62886.1); Has 174 Blast hits to 174 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR