K22213

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22213

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22213

Determination of introduced cDNA(s)

  • J013002D19 - Rice Full-length cDNAs - Original: J013002D19

    full reading [+] show sequence

    Nucleotide sequence: J013002D19 - full reading 
    GGTCTCCTCC GCTCCTCCTC TCCTTGCGCC AACAAGCCGA CTCGCGATCT 
    CCATCGGGCA AGAAGAGCAG AGCAGAGCAG GGGAGGGGAT CCTGCAGATC 
    TGGAAGAAGC TCTTAATTTC AGAGCCTTAA CCTCTCTTAA TACTACAAGT 
    AACAACAGTT TTGTTGTTTG TTCCCCCCAC CCCAAAAAGT TTAGGCGCAC 
    GCATCGCCCA TGGCCACCTT CGAGCTCTAC CGGAGGTCCA CCATTGGCAT 
    GTGCCTCACT GAGACGCTCG ACGAGATGGT CTCCAGCGGC ACCCTCAGCC 
    CGGAGCTCGC CATTCAAGTT CTTGTCCAGT TTGATAAGTC TATGACGGAA 
    GCCTTGGAGA ACCAAGTCAA GAGCAAGGTT TCTATCAAGG GCCACCTGCA 
    CACTTACAGG TTCTGTGACA ATGTATGGAC ATTCATCTTG ACTGAAGCAT 
    CATTCAAGAA CGAGGAGACT ACAGAACAAG TTGGCAAGGT GAAGATTGTG 
    GCCTGTGATT CCAAACTACT CAGCCAATAA ATTGATAACT GCGAGGTCAG 
    GGTTTGCCTG GTATTTGTTA GTCTCTTCTG CTAGACCTGG CTCCGCCTGA 
    AGTGTACTGT ACCACCACAT TGTTTGTTTC ATAATCAATG TGTGTCAATA 
    CAATCGTATG TGCTACCAGA GTATATCACA GCAGCAACTG TTTTAATTTG 
    TATGCTTATG TAATTGTTAT GCTACTGCTG TGTTGATAAT GTGATATAAA 
    TGACTAAACG ATGAGTAGTA GAAATTGTGC GGAGTCACCC TCCCCCTTCC 
    TCATTTCTGA ACCCTTTGGT TCTGTGTGAC TCTTTGTATG TAACATGAAC 
    AAATACCTCC TTTCCCGTCT TTTTTTTGGA TCCTATGTTA ATGGTACCTT 
    TACATT

    Gene models with high sequence identity

    1. AT4G24440.2 [+] show detail - transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)
      E-value: 3e-47; Score: 185.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transcription initiation factor IIA, gamma subunit, C-terminal 3e-25
    HMMPfam Transcription initiation factor IIA, gamma subunit, N-terminal 5.8e-24
    superfamily Transcription factor IIA, beta-barrel 4e-20
    superfamily Transcription factor IIA, helical 2.9e-17
    HMMPanther Transcription initiation factor IIA, gamma subunit 1.3e-58
    BlastProDom Transcription initiation factor IIA, gamma subunit, N-terminal 2e-22
    Gene3D Transcription initiation factor IIA, gamma subunit, N-terminal 4.2e-16
    Gene3D Transcription factor IIA, beta-barrel 8e-17
    HMMPIR Transcription initiation factor IIA, gamma subunit 1.6e-68

    See the detailed result >

    AT4G24440.2

    Model type
    Protein coding
    Short Description
    transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)
    Computational Description
    transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIA, gamma subunit (InterPro:IPR003194), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription initiation factor IIA, gamma subunit, N-terminal (InterPro:IPR015872), Transcription initiation factor IIA, gamma subunit, C-terminal (InterPro:IPR015871), Transcription factor IIA, helical (InterPro:IPR009083); Has 553 Blast hits to 553 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 162; Plants - 188; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR