K22218

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22218

Determination of introduced cDNA(s)

J023022G06 - Rice Full-length cDNAs - Original: J023022G06

full reading [+] show sequence

GGCTTGCCTT AAACGGGCGG CGTGACGGGG ACACACTGCC GACGATCGAA 
CGAACGAACG AACGATGCGT CCCTCCTGGT GCTCCGTCGT CGCCACCCCA 
GATGGGTCTC CTTGAGGACC TCCTCCTCGC CCCGCGCGTC GACGGCGGTG 
GCGGCGGCGA CGGCGAGGCC ATGGCGGCGC CCGACTACGC CATCCCTCCC 
CTCTCCCCAA CCGCCGCCTC CGTCGTCCAC CGATGCGCCC GGATCGCCGG 
CGTGGAGGTG GAGCAGCTGC TGCGGCGGTT CGAGCCGGAG AAGGGGGACC 
AGCCGCTGGC GTACGCCAGG AGCGTCGTGG AGTACTGCTC CTACATTGCC 
CTGCGCGTCG AGACCAAGCG CCATGACTAC CTCAGCGACA GCGAGTTCCA 
CTCGCTCACC TACGACATGA TGATCGCCTG GGAAGCCCCC GACGACGAGA 
CGGACGCCGC GTTGCAGAAA ATGTCATTTA GCTTCGTTGA CGGCAAGGAT 
GACGACGATT GTGGGTCCAT GTTCTGTTTG AGCCCCACAC AAATGGCCAT 
TCAGGTTGAT GGGAGGAGAA CGGTCAGTCC TGAAGCATTT GCCAAGATTA 
TTCCTGCGTG TCCTGCAATG GCACACGCGA TCACTGTTCG CAACTTATTT 
GATGCGCTCA CAAACTCTAC GGGAGGCCGC CTGCATTTTC TCATCTACCA 
TAAGTACCTC AAATGTTTAG ACAAGGTGCT GAGATTTGCG AAACGTATAT 
CAGGTGGACA CAAAGCTCCA GCTCTTCAAC TTTCTGATGG AGAAGTGATC 
CTTGATATCT ATGGTGCCGC GACAACCAAG CCGATTCTTC AACACATTGG 
GACGTCCACT TGGCCTGGGA GGCTCACACT GACAACCCAT GCTTTGTACT 
TTGAGCCAGT CAGTGTTGAT TTCTCATACA ACGAGGCTGT GGTGTATGAT 
CTGTCAAGGG ACTTGAAGCA GTCTATAAAA CGTGAATCAA CTGGCCCATG 
GGGTGCTCAG CTATTTGACA AAGCTGTCAT GTACAAATCT AGCTCTACAA 
GAGAGCCGGT GTTCTTCGAA TTTCCTCAAT TCAAAGGTCA CACTCGTCGA 
GACTACTGGT TTGCAATCAT CAAAGAGGTG TTGCACGCTC ACAAGTTCAT 
TAGGAAGTAC AGGATGATCA ATTTACATAA GGCCGAGGCG CTTTCTGTTG 
CGACACTAGG AATTCTCAGA TACCGCACGG TGAAGGAGGG ATTCCACATA 
CTGCCTGCAC ATTTCAAGAC TACCCTTGCC TTCAATTTGG CAGAGAAATT 
GCCCAAGGGG GACAAGATAC TGGAAGCATT GTATGGTCAG ATGAAAGATT 
ATTCCTCAAG GTTCAGAGTA GATGAAGATT CTGTTCAAAG CAGTTCAGAT 
GATCTGACGC TTGCTGATCC TTTCCCACTT TCTGCATATA CTTTGGTGAA 
CATGGGTTTG TTGACACTCA AAGAGGAGGA CAATCCCGAG GAATGGGATC 
TCACTGTCCG AGATGTGCAG ACGGGAGGAA CTAGCTCAGT GCAAATGGCT 
CTAGAGAGAT CTGTAGGTTA CTCTGGCAGA GTGGAGGCTG CGAGGGCGAC 
CCTTGATCAG GTCAAAGTGG AAGACATCGA CACTAATGTG GCTGTCCTGA 
AGGAACTGCT ATTTCCGTTA ATTGAAATAG GCAAAAGGCT TCTCTTTTTT 
GGCTGAGTGG GAAGATCCAC TTAAATCATA CGTCTTCTTG TTCTGTTTCC 
TCTTCATAGT TTACAGAGGC TGGATTTGGT ACATTTTCCC TGTCTTTCTG 
CTTGGTTCTA CCATCTTCAT GCTATGGCAA AGGCATACCG GGAACGGGCA 
GATGATAGGC GCATTTGAAG TCACAACTCC ACCTAGGAGA CGAACTGTAG 
AACAGCTACT GGCGCTGCAA CAAGCTATCT CGCAATTAGA GGCACAAGTG 
CAAGCCGGAA ACATTTTTCT TCTCAAGCTC CGATCCCTCC TGCTTGCAGC 
GTTCCCTCAA AGCACGAACA AAGTAGCAGC TACAATGCTC GTGGCATCTG 
CGATATTCGC GTACCTGCCC TTGAGAAGCA TACTTGTACT GATTGTGCTG 
GAAGCATACA CGAGGCATAT GCCGGCGAGG AAGAAGAGCA GCGAGAAGTT 
GGTGAGGAGA CTGAGAGAGT GGTGGCTGCG AATCCCAGCT GCTCCTGTAC 
AGCTCTTGAG GCCTCAGGAT ACCAGGAGAT GGACATCGAG GTTGAGATCG 
AGATGACCCA CATCGGAAAT GTCGGTACTT TACACATGTA TTATATGTAC 
CTGTAAATTC ATCATGTTGT TAGAAATGTT GATATATACG ATCAGATTTT 
TGTGTTGAAA TGGAAAGTAC ATATTGT

Gene models with high sequence identity

AT5G23390.1 [+] show detail - Plant protein of unknown function (DUF639)
E-value: 2e-147; Score: 124.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMPfam	Protein of unknown function DUF639	3.1e-55
HMMPfam	Protein of unknown function DUF639	2.6e-141

See the detailed result >

AT5G23390.1

Model type: Protein coding
Short Description: Plant protein of unknown function (DUF639)
Computational Description: Plant protein of unknown function (DUF639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF639) (TAIR:AT1G48840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR