K22219

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22219

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22219

Determination of introduced cDNA(s)

  • J013023D02 - Rice Full-length cDNAs - Original: J013023D02

    full reading [+] show sequence

    Nucleotide sequence: J013023D02 - full reading 
    GGCCTTCCGC GCCGCCCTCT CCCTCCTCCA CCGCCTCCGC ATCCGCCTTC 
    TCTCGTGCCG CCGATCTCCA TCGCCGGCGT GCGGTGCACC GAGATCCACC 
    CGAGATGTGG CGCGGCTGCG TCTCGCGTGG CCTCAGGAGC CTCTCCAAGG 
    GCAAGGGCTC CTCCTCCTCC GCCCCCGTCT CCGCCGCCGC TAGGCTCTTC 
    TCCACCGCCT CGTCGTCGTA CACGGTGGTG GATCACTCGT ATGACGCGGT 
    CGTGGTGGGA GCCGGCGGCG CGGGGCTCCG TGCGGCGATC GGGCTCTCCG 
    AGCACGGGTT CAACACGGCT TGCATCACCA AGCTCTTCCC CACGCGGTCG 
    CACACCGTCG CGGCGCAGGG TGGCATAAAT GCTGCTCTTG GAAACATGAC 
    GGAAGATGAC TGGAGATGGC ATATGTATGA CACTGTCAAG GGTAGTGATT 
    GGCTTGGTGA CCAGGATTCT ATTCAGTATA TGTGCAGAGA AGCACCAAAA 
    GCAGTTATAG AACTTGAAAA CTATGGGTTG CCATTTTCAA GAACTGAAGA 
    TGGAAAGATA TACCAACGGG CCTTTGGAGG CCAGAGCTTA GATTTTGGGA 
    AAGGTGGGCA GGCCTATCGA TGTGCATGTG CTGCTGACAG AACAGGACAT 
    GCTATGTTAC ACACTCTGTA TGGTCAAGCA ATGAAGCATA ATACTCAGTT 
    CTTTGTAGAA TATTTTGCGC TAGACCTTAT CATGGACAGT GAAGGCACCT 
    GTCAGGGGGT TATTGCTTTG AACATGGAGG ATGGCACTCT TCACCGTTTC 
    CGTGCTACAA ATACAATTCT GGCCACAGGA GGTTATGGCA GAGCCTACTT 
    CTCAGCAACC TCAGCTCACA CATGCACTGG AGATGGCAAC GCTATGGTTG 
    CACGTGCTGG TTTACCACTT CAGGACCTTG AGTTTGTGCA GTTCCATCCT 
    ACAGGCATTT ATGGTGCTGG ATGCCTTATC ACTGAAGGTT CCCGTGGTGA 
    AGGTGGTATC CTTAGGAACA GTGAAGGCGA GCGTTTCATG GAACGATATG 
    CTCCTACTGC AAAAGATCTT GCTTCTCGAG ATGTTGTTTC AAGATCTATG 
    ACAATGGAAA TCAGAGAAGG CCGTGGTGTT GGGCCATTGA AGGACCACAT 
    CTAGCTGCAT CTTAACCATC TGCCTCCAGA AGTTCTTAAG GAGAGGCTTC 
    CTGGTATTTC TGAAACTGCT GCTATTTTTG CTGGTGTTGA TGTCACCAAG 
    GAGCCCATTC CTGTCTTGCC TACTGTGCAC TATAATATGG GTGGGATCCC 
    AACAAATTAC CATGGAGAGG TAGTGACTAT GAAGGGTGAC AATCCTGATT 
    CTGTTGTTCC TGGTTTGATG GCTGCGGGAG AAGCAGCATG TGCATCTGTT 
    CATGGTGCAA ATCGTCTGGG TGCAAATTCA CTTCTTGACA TAGTTGTTTT 
    TGGCAGAGCT TGTGCAAACA GGGTAGCTGA AACCGCTAAG CCAGGTGAGA 
    AGCAGAAACC TCTTCAAAAA AGTGCTGGAG AAAAGACCAT AGCCTGGTTA 
    GACAAGCTGA GAAATGCAAA TGGATCATTG CCAACTTCCA AGATCCGTCT 
    AAACATGCAA CGTGTTATGC AAAATAATGC TGCTGTCTTC CGTACGCAAG 
    AAACACTCGA GGAAGGTTGC AAATTGATTA CCAAGGCATG GGAAAGTTAT 
    CATGATGTGA AGATCAGTGA CCGGAGTCTC ATATGGAATT CAGATTTGAT 
    AGAGACCATT GAGTTGGAAA ATCTCTTGAT AAATGCATGC ATAACCATGC 
    ACTCAGCAGA GGCTCGGAAG GAAAGCAGAG GAGCTCATGC TCGTGAAGAT 
    TTCACGAAAA GAGATGATGA GCAATGGATG AAGCACTCGC TGGGGTACTG 
    GGAGAATGAG AAGGTTCGCT TGGCATACAG GCCAGTCCAC ATGAACACAT 
    TGGACAGTGA AGTTGAGTCG TTCCCACCCA AGGCGCGTGT TTATTAGTTC 
    GGGATTCACG CAGCGCCGTA ATTCTGTGTG GTGTTAATAA TTCAGGGGCT 
    GGGCATTCCT AGCTGAAAGT GCGACCTGAA TTCCATCCTC CTTTTTCCCT 
    CGGTATTTTG TGTAATTTGC TAGAAAAATA AAGGACAAAC TCATGCTAAT 
    GCTAGTGCCT AACTGGTCCC TTCTGGGCAA CTTGTATAAA TGAAATTTTG 
    TACTGCTTGC C

    Gene models with high sequence identity

    1. AT5G66760.1 [+] show detail - succinate dehydrogenase 1-1
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNI 2.5e-215
    HMMPanther SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNI 2.5e-215
    HMMPanther SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNI 1e-156
    HMMPanther SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNI 1e-156
    HMMPfam Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal 6.4e-93
    HMMPfam Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal 8.4e-48
    HMMPfam Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal 2.9e-24
    superfamily FAD/NAD(P)-binding domain 5.6e-64
    superfamily Succinate dehydrogenase/fumarate reductase fl 7.1e-39
    superfamily Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal 6e-49
    superfamily FAD/NAD(P)-binding domain 0.00000000000003
    superfamily Succinate dehydrogenase/fumarate reductase fl 0.000000000001
    Gene3D no description 2.4e-86
    Gene3D no description 0.000013
    Gene3D no description 9.1e-37
    PatternScan Fumarate reductase/succinate dehydrogenase, FAD-binding site 0

    See the detailed result >

    AT5G66760.1

    Model type
    Protein coding
    Short Description
    succinate dehydrogenase 1-1
    Curator Summary
    One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex.
    Computational Description
    succinate dehydrogenase 1-1 (SDH1-1); FUNCTIONS IN: cobalt ion binding, succinate dehydrogenase activity, ATP binding; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrial respiratory chain complex II, mitochondrion, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase, flavoprotein subunit (InterPro:IPR011281), Fumarate reductase/succinate dehydrogenase, FAD-binding site (InterPro:IPR003952), Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal (InterPro:IPR015939), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Succinate dehydrogenase/fumarate reductase, flavoprotein subunit (InterPro:IPR014006), Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal (InterPro:IPR004112); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 1-2 (TAIR:AT2G18450.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR