K22224

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22224

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
T2  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22224

Determination of introduced cDNA(s)

  • J013049G21 - Rice Full-length cDNAs - Original: J013049G21

    full reading [+] show sequence

    Nucleotide sequence: J013049G21 - full reading 
    GACTCAGCAA CAGCTCGCAG CTCACTCTCT CACTCTACTA CTCGTAGCTA 
    AGCTAGCTCG CGCCGCCGCC GCCGCCGTCG CCGCCGCCAT GAGCAAGGAG 
    AAGCACCACA AGCGGGAGCA CCACCTCCGG CGATGCTGCG GCGGGATGGC 
    GGCGTGCATC CTGGCGCTGG TCCTCGTCGT CGGCTTCATC GCGCTCGTCG 
    TCTACCTCGC GCTCCGCCCC TCCAAGCCGT CCTTCTACCT GCAGGACCTC 
    CAGCTCCGCT CCGTCGACCT CGGCGACCCC TCCCTCTCCG CCACCGCGCA 
    GGTCACCCTC GCCTCCCGCA ACCCCAATGA CCACGTCGGC GTCCACTACC 
    GCCGCCTCGA CGTCTTCGTC ACCTACCGCG ACGAACCCGT CACGGTGCCC 
    GTCTCCCTCC CGCCGACCTA CCAGGGCCAC CGCGACGTCA CCATCTGGTC 
    GCCCGTGCTC TCCGGCGAGT CCGTCCCCGT GGCGGGCTTC GTCGCCGACG 
    CGCTCAGGCA GGACGTCGCC GCCGGGTACG TCGCGCTGCA GGTGAAGGTC 
    GACGGCCGCG TCAAGTGGAA GGTCGGCAGC TGGGTCTCCG GCAGCTACCA 
    CCTCTTTGTC AGCTGCCCCG CCATGCTCGC CTCCGCCGGA CCAGGCGGCG 
    TCGGCCCCAT GCCTCTCGGC GGCGCCTCCG CCGCCGTCGT GAACGGCACC 
    GGCGCCGGCG CCGTCGCGTC GCTCAGGTTC ACGCAGCCGA CAGGGTGCAG 
    CGTCGAGGTG TGAGTCACAA ATTTGAGTAG CGGCTAGTGG CAATATGGTA 
    ATTAATTAAG TTCATCGGTC GCGTTAATCC GCAAGCTGTT AATTTTTTTT 
    TTGTGTTCAT GTAGCTCATG CATACTCTAT GTGAGAGAAT AAAGTTACGT 
    ACGTTCATAT GTATACCATT GCAACACATT AATTTCCTAT ATGAAGTGTA 
    CTAGTATAAT TTCGTTGCTG TAATTTTTGA ATTATTGTTA ATAATATATA 
    TTCAGGT

    Gene models with high sequence identity

    1. AT5G22200.1 [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
      E-value: 5e-44; Score: 175.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Late embryogenesis abundant protein, group 2 4.9e-15
    Coil coiled-coil 0

    See the detailed result >

    AT5G22200.1

    Model type
    Protein coding
    Short Description
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
    Computational Description
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G44220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR