K22227

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22227

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22227

Determination of introduced cDNA(s)

  • J033131M19 - Rice Full-length cDNAs - Original: J033131M19

    full reading [+] show sequence

    Nucleotide sequence: J033131M19 - full reading 
    GAGTGCCACC GCGCAGTTCT CTCCTCTTTC TCTCCCCGCT CCGGCGGCGC 
    CGCGGCGGTG CTCCTCGTCG TCCTCGTCTC CCCGTCGCCG ACTAGCCGTG 
    CCGGGGATAT CTCTCCGACC CGGGGTGAAG AAAATCTGTC CTTGTTCAAA 
    AGTTTTTCAA TTTGGGTGTC CTACCTATAT ATGATCCAGT TGTAAAAAGG 
    CTGACTAAGG GCATGGATGG AAACAAAGAC GAGGCCTTGA GGTCTGTCAA 
    ACTTGCAGAA ACTGCACTTG CATCTGGAGA TAGACAGCGA GCAGAAAAAT 
    TCCTTCGAAT TGCCCAAAGA TTGGACCCCA GCCTTCCGAT TGATGATATG 
    CTGGGCACAC CCAAGAAGTA TGATACCCTG GATGGTGCTG TACGCCAATA 
    CAGGGCTAGA AGTGGTGAAG TTGGTGAAAG CCAAAATTTG CGTAAAGAAT 
    CTGTTGGTCC TTCTAATGTT GATAAGGGTT ACACTGAGGA AAATGTTAGA 
    GTGGTTCGGA ACATCACAAA GAACAAGGAT TATTATGCAA TTCTTGGAGT 
    GGAGAGAAGT TGCTCTGTAG AAGAGATAAG GAAAGCCTAC AGGAAGTTGT 
    CACTGAAAGT TCATCCTGAC AAGAACAAGG CTCCTGGGGC AGAGGATGCA 
    TTTAAGTTGG TCAGCAAGGC TTTCAAGTGC CTAAGCAATG ATCAGTCAAG 
    GAGAACTTAT GATCAAACAG GTGCCATTGA GGACCATGAG TTTAATTATC 
    AGTATTCCAA TGTCATGAGG CAGAGAACTA CAAGGCGACA AAGGCAAGCA 
    AGAAGTAGCT TCTATGGTTA TGAAGAAGAC TTAGATCCAG ATGAGATATT 
    CAGGTCGTTC TTTTATGGGA CCCATGATAA TATGTTCCAG TCTCACAATG 
    CCTACAGAGC AAGAGGAACA GTGAGGCAAC AGCAACAACA GAGACGGGAA 
    CATCCGGTTC AGGGTGGGTC AGGCATAAAT TTAACAATGT TGGTGCACCT 
    TGCAGGGGTT TTGTTTTTCA TCTTGTTTGC TTTCATTCCA GCAAGGCATC 
    CTGAGTATTC CCTTAAAAGG ACAAGCTACT TTTCTATATC AAAAGTCACT 
    GAAAAGCATG GGGTGGAGTA CTTTGTCAGC AAACAAGAAT TCGACCAGCA 
    GTTTCCACGA GGAAGTTCTT CTAGAGATAA TCTTGAGCAG TATGTTTTTA 
    AAGACTACAA GAGCATGCTG GGAAGATTCT GTCATGTGGA ACTCCAAAGG 
    CGCCAATGGG CCAAGGACTA CCCTACACCT CACTGTGACA AACTGCGGAG 
    CCTTTCTGTA GCATAAATGG TTTGGCCTCT TCTTTTGTTA GTAGAAGAGT 
    TTCGCTCTTC CTTTGCAGGT ATATCACGGC ACAGGTTTTT TGGGGAAATG 
    ATGAGCAGCG TGGTTTCTTG GTCTATGATT TTAAATACTT AGGAAGTAGT 
    AGATACTATT GCTGCATTTT AGTTATGAAC ACATGCATGC AGTCATGAAC 
    CATCAGGTTA ACTCACAGAT CTCTGTTTAC TATTGATGTC AACCTTGAGC 
    GGCATGGAGT TCATATTGAA ACGGGCCGGT TACTTTTGCT GCAGTAATCA 
    TTTCACACTT GCTTCCAGTT GTAAAACTGG TGCCAACGAA TTTTTGTACA 
    GATATGTTCA CCTTTCTTTT TTTATAAAGA AACAGAGGGA TATGTTTAGC 
    TTG

    Gene models with high sequence identity

    1. AT5G49060.1 [+] show detail - Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)
      E-value: 2e-72; Score: 270.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Heat shock protein DnaJ, N-terminal 3.1e-27
    HMMPfam Heat shock protein DnaJ, N-terminal 1.9e-24
    HMMPfam Protein of unknown function DUF1977, DnaJ-like 6.6e-17
    HMMPanther DNAJ-RELATED 1.1e-61
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 1.1e-61
    HMMSmart Heat shock protein DnaJ, N-terminal 1.6e-26
    FPrintScan Heat shock protein DnaJ 1.7e-09
    FPrintScan Heat shock protein DnaJ 1.7e-09
    ProfileScan Heat shock protein DnaJ, N-terminal 19.946
    Gene3D Heat shock protein DnaJ, N-terminal 5e-23

    See the detailed result >

    AT5G49060.1

    Model type
    Protein coding
    Short Description
    Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)
    Computational Description
    FUNCTIONS IN: protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Protein of unknown function DUF1977, DnaJ-like (InterPro:IPR015399), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (TAIR:AT3G57340.2); Has 23804 Blast hits to 23788 proteins in 3287 species: Archae - 182; Bacteria - 9342; Metazoa - 4208; Fungi - 2292; Plants - 2452; Viruses - 18; Other Eukaryotes - 5310 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR