K22232

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22232

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22232

Determination of introduced cDNA(s)

  • J023148H12 - Rice Full-length cDNAs - Original: J023148H12

    full reading [+] show sequence

    Nucleotide sequence: J023148H12 - full reading 
    GGCACGTTAG CAATAGGGTT CTTTCATTTT CCCCAAAAAA AAATCCAACC 
    CTATTAAGTT TTTTTTTATT TAAACAATCA AGAAAAGAAA AAAAGAGAAA 
    CAAAGTTTCA TGACAAATAG TATATAGTTA TAGACAAAGA GAATAATATA 
    TAGGAAGATA TATATCCATG GATGACCAGA GGCTCCAGTG GAGGAAGCCC 
    GGCTCCTTCC TCCTCGTCGC CGGCGTGTTC CTGGCGGCGG CGGCCGCTGT 
    GTCGAACGCC GGCATAGGCG AGTTCGACGA GCATTGGGAG AAGCGCAGGG 
    CGGCGGCGGA GGCGGCGGCG GAGGAGGTGT ACAAACCGGA CCCCTTCAAT 
    GTCACCAACG AGTTCAACCA CGCTGTCATC AGATCGACGG AGCGCGGCGT 
    TCTCCGGCGA GAGTTGAGTG GGAAGAACAG CAAGTACAAG GGGCCGTGCC 
    TGGCGACGAA CCCGATCGAC CGGTGCTGGC GCTGCCGCAA GGACTGGGCC 
    ACCGACCGGA AGCGGCTCGC CCGGTGCGCC ATGGGCTTCG GCCGCGGCGC 
    CACCGGCGGC GTCCGCGGCA AGATCTACGT CGTCACCGAC CCCGGCGACG 
    GCGACGCCGC CAACCCGCGC TACGGCACGC TCCGGTGGGG CGCCATGCAG 
    GCGGCGCCGC TGTGGATCAC CTTCGCCAAG TCCATGGTGA TCCGCCTCAC 
    GCAGGAGCTC CTCGTCGCCA GCGACAAGAC CATCGACGGC CGCGGCGCGC 
    AGGTGCACAT CGCGCGCGGC GGCGCCGGGA TCACCGTCCA GTTCGCCCGC 
    AACGTGATCA TCACCAGCCT CCACGTCCAC GACGTGAAGC ACAGCGACGG 
    CGGCGCGGTC CGCGACTCGC CGACGCACAT CGGCCCCCGC ACGCGGGCCG 
    ACGGCGACGG CATCTCGCTC TTCGCCGCCA CCGACGTGTG GGTGGACCAC 
    GTCTCCATGT CCATGTGCGA GGACGGGCTC ATCGACGTCG TGCAGGGCTC 
    GACGGGGGTG ACCATCTCCA ACAGCCACTT CACCAACCAC AACGACGTCA 
    TGCTGTTCGG CGCCAGCGAC TCGTACCCGC AGGATAAGGT GATGCAGATC 
    ACCGTGGCGT TCAACCACTT CGGCCGTGGG CTCGTGCAGC GGATGCCGCG 
    ATGCCGGTGG GGGTTCTTCC ACGTCGTCAA CAACGACTAC ACGCACTGGC 
    TCATGTACGC CATCGGCGGC GGCATGAGCC CTACCATCCT CAGCCAGGGC 
    AACCGATACA TCGCCCCTCC CAACATCGCC GCCAAACTGA TCACGAGGCA 
    CTATGCGCCG GAGTGGGAGT GGAAGAACTG GGCGTGGCGC TCGGACGGAG 
    ACCTGTTCAT GAACGGCGCC TACTTCCAGG CGTCCAACGG CGCCATCAAC 
    AGGAAGGTGA AGGGCTCCGA CATGGTTAAG CCCAAGCCAG GCTCCTACGT 
    CAGGAGGCTC ACACGCTTCG CCGGCGCGCT CTCCTGCCGG CCCGGCGAGC 
    CGTGCTGATC CGCCGGCGAG ATGACGTCAC GTAGGCATGC AGCATGAGCG 
    ACCACGGAGA TCATCATCAT CAAGAAAAAA AATATAATGG GGAAAGAAAA 
    TTAAACATTT GGACGACATA GAAGGGTGAC AAATGGAAGG GTAGCCAGGT 
    TAAATTTCCT GTCCATTTTG TCTTGAAATT GAGTGAATTT TGGTATGTTC 
    GTATTTTCAA GAGGGGCCAG GGATTATCCA CAACATGTAC TATCTCTATG 
    TATAGTGTAA TACAGCATGG ATGTAACGAT TGCTCTTTGC GATCACCAAT 
    GACCAAAAAA ATGTAAAATA TTGTT

    Gene models with high sequence identity

    1. AT1G14420.1 [+] show detail - Pectate lyase family protein
      E-value: 2e-130; Score: 463.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Pectate lyase/Amb allergen 1.2e-97
    FPrintScan AmbAllergen 2.8e-77
    FPrintScan AmbAllergen 2.8e-77
    FPrintScan AmbAllergen 2.8e-77
    FPrintScan AmbAllergen 2.8e-77
    FPrintScan AmbAllergen 2.8e-77
    FPrintScan AmbAllergen 2.8e-77
    FPrintScan AmbAllergen 2.8e-77
    FPrintScan AmbAllergen 2.8e-77
    superfamily Pectin lyase fold/virulence factor 2e-103
    HMMPfam Pectate lyase/Amb allergen 7.9e-59
    HMMPfam Pectate lyase, N-terminal 1.7e-17
    Gene3D Pectin lyase fold 1.3e-94

    See the detailed result >

    AT1G14420.1

    Model type
    Protein coding
    Short Description
    Pectate lyase family protein
    Computational Description
    AT59; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT2G02720.1); Has 1736 Blast hits to 1725 proteins in 285 species: Archae - 2; Bacteria - 722; Metazoa - 0; Fungi - 281; Plants - 703; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR