K22238

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22238

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22238

Determination of introduced cDNA(s)

J033057I02 - Rice Full-length cDNAs - Original: J033057I02

full reading [+] show sequence

GGTTCGCGAC ACACACACGC ACACCTGAGC CGAAGCACGC ACGAATCCAA 
CGCCGAGATG AGGCCGTCGC TGCTGAGATA CGCCGCGCAG GCGCTCCGCC 
GCCGCGACTA CTCCTCCGCC GCCGCGGCCG CTGAGCGGAA GGTGGCCATC 
CTCGGGGCGG CGGGCGGGAT CGGCCAGCCG CTCGCGCTCC TCATGAAGCT 
CAACCCGCTC GTCTCGTCCC TCTCCCTCTA CGATATCGCC GGAACCCCCG 
GCGTCGCCGC CGATGTCTCC CACATCAACT CGCCGGCGCT GGTGAAAGGC 
TTCGTCGGGG AGGAGCAGCT CGGGGAGGCG TTGGAGGGTT CGGACGTCGT 
AATCATCCCG GCCGGTGTGC CGAGGAAGCC CGGCATGACC AGGGACGACC 
TCTTCAACAT CAACGCCGGC ATTGTTAAGG GCCTCTGCAC TGCCATCTCC 
AAGTACTGCC CCAACGCTCT TGTCAATATG ATCAGCAGCC CTGTCAACTC 
GACTGTCCCC ATCGCAGCGG AGGTGTTCAA GAAGGCTGGT ACTTACGATG 
AGAAGAAACT GTTTGGTGTG ACCACGCTTG ATGTTGTGCG CGCTAAAACT 
TTCTATGCTG GAAAGGCTAA TGTGCCAGTT ACTGAAGTGA ATGTCCCTGT 
GGTTGGTGGC CATGCTGGTA TTACTATCCT GCCACTGTTC TCGCAGGCAA 
CCCCTGCAAG TAATGCATTG TCGCATGAGG ACATTAAGGC TCTGACCAAG 
AGGACACAAG ATGGTGGGAC GGAAGTTGTT GAAGCAAAGG CTGGAAAGGG 
TTCTGCAACA TTGTCTATGG CATATGCTGG TGCGGTATTT GCAGATGCGT 
GCTTGAAGGG GCTTAATGGA GTTCCTGATG TTGTAGAGTG CTCTTTTGTG 
CAATCAACAG TAACAGAGCT GCCATTCTTC GCCTCAAAGG TAAGGCTTGG 
CAAGAACGGA GTGGAGGAAG TACTTGGGCT GGGCCAGCTT TCCGAGTTTG 
AGAAGGAGGG TCTGGAGAAC CTGAAGGGTG AGCTCAAGTC TTCGATTGAG 
AAGGGCATCA AGTTTGCTCA CGCGAACTAG GCAACCTATG CAGATTCTAA 
CAATTCAAAT GTGAACTAGA GGGGGGGTCC CTCGAATTTT TGGTTTGACT 
GTTGTTCTGC CCCGATCTGC TGGGGCACCG AGATGTTGTG CTCCAGAATA 
AAATCTTGCG GCTTGATGCC AACCTGAACT CAAAACTTGT ACCTGAAACA 
GCGACTCCGG TGCTATTTTT CACCTTGTAC CTGAAACTGC GTACAGTGAA 
CCC

Gene models with high sequence identity

AT1G53240.1 [+] show detail - Lactate/malate dehydrogenase family protein
E-value: 2e-134; Score: 475.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	NAD(P)-binding domain	1e-42
Gene3D	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	1.9e-57
HMMPanther	Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria	1.8e-202
HMMPanther	MALATE AND LACTATE DEHYDROGENASE	1.8e-202
HMMTigr	Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria	7.7e-162
PatternScan	Malate dehydrogenase, active site	0
HMMPfam	Lactate/malate dehydrogenase, N-terminal	3.5e-47
HMMPfam	Lactate/malate dehydrogenase, C-terminal	1.1e-45
superfamily	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	4.5e-52
superfamily	NAD(P)-binding domain	1.4e-42
HMMPIR	L-lactate/malate dehydrogenase	6.1e-51

See the detailed result >

AT1G53240.1

Model type: Protein coding
Short Description: Lactate/malate dehydrogenase family protein
Computational Description: Lactate/malate dehydrogenase family protein; FUNCTIONS IN: malate dehydrogenase activity, copper ion binding; INVOLVED IN: response to cadmium ion, response to salt stress, response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation; LOCATED IN: mitochondrion, cell wall, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT3G15020.1); Has 17502 Blast hits to 17499 proteins in 5422 species: Archae - 240; Bacteria - 12205; Metazoa - 1281; Fungi - 536; Plants - 649; Viruses - 0; Other Eukaryotes - 2591 (source: NCBI BLink).
Link: InterPro Scan - TAIR