K22242

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22242

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22242

Determination of introduced cDNA(s)

  • J023079A13 - Rice Full-length cDNAs - Original: J023079A13

    full reading [+] show sequence

    Nucleotide sequence: J023079A13 - full reading 
    GACCCGCGCC GCGCCCCACC CAAGACGAGA GCGAGCGAGG CAGTGCCGCC 
    GCCGCCGCCA CTGACGCCGC CCGAGCACCA CCGGAGCAGG AGCAGCGTCA 
    GCCATGGCCG TCGGCAAGAA CAAGCGGATC TCGAAGGGGA AGAAGGGATC 
    CAAGAAGAAG ACCGTCGATC CTTTTGCGAA GAAGGATTGG TATGATATCA 
    AGGCCCCGTC GGTGTTCAAC GTGAGAAACG TCGGGAAGAC GCTCGTGTCC 
    AGGACACAGG GCACAAAGAT TGCTTCAGAG GGCCTCAAGC ACCGTGTGTT 
    TGAGGTCTCC TTGGCTGATC TTCAGAACGA TGAGGATCAG GCGTACCGTA 
    AGATCAGACT ACGTGCCGAG GATGTGCAGG GGAAAAATGT TCTTACAAAC 
    TTCTGGGGCA TGAGTTTCAC GACCGACAAG CTCAGATCAT TGGTCAAGAA 
    ATGGCAGACG CTAATAGAGG CTCATGTGGA TGTAGAGACC ACTGATAACT 
    ACATGCTGCG TCTCTTCTGC GTTGGCTTCA CCAAGAGGAG GCCAAATCAA 
    GTCAAACGGA CATGCTATGC TCAAGCAAGC CAGATTCGAC AGATCCGTCG 
    CAAGATGGTG GAGACCATGG TGAACCAGGC ATCATCCTGT GATCTCAAGG 
    AGCTGGTGTC AAAATTCATT CCTGAGGTGA TTGGGAAGGA AATCGAGAAG 
    GCCACATCAA GCATCTTCCC GCTTCAGAAT GTGTTTGTGC GCAAAGTCAA 
    GATCCTCAAG GCCCCAAAAT TTGACCTGGG CAAGCTTATG GAGGTTCATG 
    GAGATTAAAG GAGGACGTTG GGACGAAGCT CGAGAGGCCT GCAGAAGATG 
    AGGTCGTGGT AGGACAGGAG GTCACTGCCG AGTAGATTTT CACTTATTTT 
    ACTGCTATTT TATTCAGACA ATATATATAT GTATCGCCTA TCAAGGTTTT 
    GATCACGAGC AGCAGGCTCG GTTTTTGTGG CTAATTTCCT GAATACTTTC 
    TTGAGATTAC TAGCCAGCAT CGTTTTTGTT TTCTGGATGG AAGTTTATTT 
    GTCTAAAGTT TGTGCTTTCT TTTTTTTGCA ACCTGACAAG TCAAGACTGA 
    TAAAGAAGAA AGTTCTTT

    Gene models with high sequence identity

    1. AT4G34670.1 [+] show detail - Ribosomal protein S3Ae
      E-value: 4e-106; Score: 25.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein S3Ae, conserved site 0
    HMMPfam Ribosomal protein S3Ae 1.1e-81
    HMMPanther Ribosomal protein S3Ae 3.6e-101

    See the detailed result >

    AT4G34670.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S3Ae
    Computational Description
    Ribosomal protein S3Ae; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S3Ae, conserved site (InterPro:IPR018281), Ribosomal protein S3Ae (InterPro:IPR001593); BEST Arabidopsis thaliana protein match is: Ribosomal protein S3Ae (TAIR:AT3G04840.1); Has 1362 Blast hits to 1357 proteins in 408 species: Archae - 234; Bacteria - 1; Metazoa - 463; Fungi - 247; Plants - 191; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR