K22250

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22250

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22250

Determination of introduced cDNA(s)

  • J033121D22 - Rice Full-length cDNAs - Original: J033121D22

    full reading [+] show sequence

    Nucleotide sequence: J033121D22 - full reading 
    GATCCGCATC TCCCCACCCA TTGGTTCCCT TTCCAATTTC ACCTCGCCCA 
    ACCCTATTTA TTTATTTATT TAACCCTTCC CCCATCTCGC CTCCATTCTT 
    GGAGACCAAG AAGAAGAAAG AGGAAACCAC ACCCACCTCC ATCTCCGCCT 
    CCGCCGCCGC CGCCGCCGAC CAAGTCGAGG GGGAGATCCA GCGAGAGCGA 
    GGAGGAGGAG GAGGATGGCG GTGATGGAGG AGCAGCAGGA GGGAGCCGCG 
    GGGGTGATGC GGCGGAGGCC CAAGACGAAG ATCGTGTGCA CGCTGGGGCC 
    GGCGTCGAGG TCGGTGGAGA TGATCGGGCG GCTGCTCCGC GCCGGGATGT 
    GCGTCGCGCG CTTCAACTTC TCCCACGGAT CCCACGAGTA CCACCAGGAG 
    ACGCTCGACA ACCTCCGCGC CGCCATGGAG AGCACCGGCA TCCTCTGCGC 
    CGTCATGCTC GACACCAAGG GGCCAGAGAT CCGAACTGGA TTTCTGAAAG 
    ATGGAAAACC CGTACAGTTG AAGAAGGGTC AAGAAATCAC AGTTTCAACT 
    GATTATAGCA TAAAGGGTGA TGACAACATG ATATCAATGA GCTACAAGAA 
    GCTAGCGGTG GATCTGAAGC CAGGCAGTGT AATATTATGT GCTGATGGCA 
    CCATCACTCT TACTGTCCTT CACTGTGATA AAGAGCAAGG CTTGGTTCGC 
    TGCCGTTGTG AGAACACTGC TATGCTTGGT GAGAGGAAGA ATGTTAACCT 
    TCCAGGAGTT ATTGTTGATC TCCCGACACT TACTGAGAAG GACAAGGAGG 
    ATATTCTTAA ATGGGGTGTC CCAAACAAGA TTGACATGAT TGCTCTGTCT 
    TTTGTTCGTA AAGGCTCAGA CCTTGTAGAG GTCAGGAAGG TGCTTGGGAA 
    GCATGCAAAG TCAATAATGC TGATGTCAAA GGTTGAGAAT CAAGAGGGAG 
    TGGCTAACTT TGATGATATC CTGGCACAAT CTGATGCTTT TATGGTTGCA 
    AGGGGTGATT TGGGAATGGA AATTCCGATA GAGAAGATCT TTTATGCACA 
    GAAGGTGATG ATTTTCAAGT GCAATATTCA GGGCAAGCCA GTTGTGACTG 
    CAACCCAGAT GTTGGAATCT ATGATCAAGT CTCCCCGCCC TACTAGAGCA 
    GAAGCGACTG ATGTTGCCAA TGCAGTTCTT GATGGCACTG ACTGTGTCAT 
    GCTCAGTGGT GAGACAGCTG CTGGGGCTTA CCCGGAACTG GCTGTACGGA 
    CCATGGCCAA GATCTGCCTG CAAGCGGAGT CATGCGTCGA CCATGCCGCT 
    GTTTTCAAGT CCATTACCGC ATCAGCTCCA ATTCCCATGA GCCCATTGGA 
    GAGCCTTGCA TCATCAGCTG TGCGTACAGC GAACTCTGCC AAGGCGGCGC 
    TCATCTTGGT CCTGACTAGG GGAGGAACAA CTGCTAGGCT GGTGGCCAAG 
    TACAGGCCAT CCATGCCGAT TCTGTCCGTC GTGGTTCCTG AGCTGAAACA 
    GACCGACTCC TTCGACTGGA CCTGCAGCGA CGAAGCTCCT GCGCGGCACA 
    GCCTCATCGT CAGGGGAGTG ATCCCGATGC TGAGTGCAGC CACTGCCAAG 
    GCCTTCGACA ACGAAGCCAC TGAAGAAGCT CTCGGGTTCG CCATCAGCAA 
    CGCCAAGGCG ATGGGGCTCT GCAACTCCGG TGAGTCCGTC GTCGCCCTCC 
    ACCGGATCGG AACTGCATCT GTCATCAAGC TCCTGACAGC GAACTAGTGG 
    CAGACGGCAG TTAATCCACA CCATTTTGCT CGGAGGAAAA TTTTTGCTGG 
    GGGATTCTTA CTTACCACGC ATATCTATAG CTTTTGTTGC CATGATAGTG 
    GCATTTGCAT TCAGGTGCAC CTTCGGTGTT TGCTGTTCAT GGGTTAACCA 
    TTGAAACAGT TAAATTCGTT ATTGCTACCG CAGCTTATTT CGCTGCCTCT 
    GCTGCTACTA GTATTAAACT TGACAGCCG

    Gene models with high sequence identity

    1. AT5G56350.1 [+] show detail - Pyruvate kinase family protein
      E-value: 0; Score: 801.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Pyruvate kinase, barrel 1.7e-74
    FPrintScan Pyruvate kinase, barrel 1.7e-74
    FPrintScan Pyruvate kinase, barrel 1.7e-74
    FPrintScan Pyruvate kinase, barrel 1.7e-74
    FPrintScan Pyruvate kinase, barrel 1.7e-74
    FPrintScan Pyruvate kinase, barrel 1.7e-74
    FPrintScan Pyruvate kinase, barrel 1.7e-74
    HMMTigr Pyruvate kinase 1.5e-195
    HMMPanther Pyruvate kinase 8.5e-268
    Gene3D Pyruvate/Phosphoenolpyruvate kinase, catalytic core 8.3e-90
    Gene3D Pyruvate kinase, alpha/beta 5.9e-21
    HMMPfam Pyruvate kinase, barrel 5.3e-155
    HMMPfam Pyruvate kinase, alpha/beta 4.6e-21
    superfamily Pyruvate/Phosphoenolpyruvate kinase, catalytic core 3e-96
    superfamily Pyruvate kinase, C-terminal-like 2.5e-28
    superfamily Pyruvate kinase, beta-barrel-like 7.3e-27
    PatternScan Pyruvate kinase, active site 0

    See the detailed result >

    AT5G56350.1

    Model type
    Protein coding
    Short Description
    Pyruvate kinase family protein
    Computational Description
    Pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT4G26390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR