K22301

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22301

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22301

Determination of introduced cDNA(s)

  • J023143I03 - Rice Full-length cDNAs - Original: J023143I03

    full reading [+] show sequence

    Nucleotide sequence: J023143I03 - full reading 
    GAAAGTGTAA AAATTCCTGC CACCCCAATC CTTCTCCCGG CCGTACACCA 
    TTTCGTTCCG ACGCGAGTAA TTCCTCCCCA CGGGCGGCGA CTAGGGCGGC 
    TAGGGTTCGT CGGGCGCCGC CGTGCCGGAG ATCGCCTCTC GCCGCCGACA 
    CCCGGATCTC CGCCGCCGCC GGTCGCCCCA GGTTATCCCG CTCCCGCAGT 
    CACCATCCCG TCTTCTCCGC CAGTCGCCTC ACGCCCGGCC TGGACGCCCC 
    GGAATCCATT GTCGGTCTCG CCCCGCCGAC TGCCGTTGAC GCCACTGGCT 
    GAAGGTGTGA ATATGTCGGA CAGTGCGTTG AAAGATCTGA ATCTAGCTCA 
    GTCAGCAGAG CTGGAGAAAA CCAAGGACAG TTCTGCCAAG TCTTGCATCA 
    CCAAGCCTGT CTTGAATGGC AACAAATGCA ACAATACGGA AGAAAATGCT 
    CCACCTGTAC TCCCTGATGC TGTGACTAAT GGGTGTGAAG CTGGAAATGC 
    AGATGTTGAG TATATTGATT CTGAGAGTCT GACAGATCTT GAAGATGCTG 
    GTGCAACCCT TAGTACTTTA GTTGCAAGGT TGGATTCAAA AGACTGGGTT 
    ATGACATGTG AAGCTCTAAA TAATGTTCGT CAGTTGGCAA TATTTCACAA 
    GGATAGATTG CAGGAACTTC TAGAGCCTCT AGTTCCTCTT ATTGTGAAAT 
    CTGTCAAGAA TCCAAGGAGT GCTGTCTGTA AAACCACACT CATGACCTGC 
    GCTGATATTT TCAAGGCATA CGGTGACCTA ATGGTTGACT CAATTGATCC 
    ACTGTTAGTG CAGCTATTTC TGAAATCTTC ACAAGATAAG CGTTTTGTCT 
    GTGAAGCTGC TGAGGCAGCC CTCATATCGA TGACAAGCTG GATCGCCCCT 
    TCTGCTCTGT TACCAAAAAT GCAACCTTAC CTTAAGAACA GGAATCCACG 
    AATTCGAGCA AAAGCATCAA TGTGCTTCAG CAAGAGCGTC CCACGCTTGG 
    GTGTGGAGGG AATTAAAGAA TATGGAATGG ATAAGCTTGT TCAGATCGCA 
    GCAACTCAGC TTAGTGACCA GCTTCCTGAA TCCAGGGAGG CTGCTCGCAA 
    GCTGGCTTTG GAGCTACAAG CATTCTATGA GAAATCCCAA GCTTCGAGTT 
    CTGGTGAAGT TGACGACGCA CCTGCTACCT CACCTGATGC TGATGCTGAT 
    GCTGGTGCTG AATCATGGGA AGCTTTCTGC CAATCAAAGC TTTCCCCATT 
    AAGTGCACAG GCAATCCTTC GTGTCACCTC TACGACGAAA GAGGGTGTGG 
    CTGTGGGTGT CACCTCTACC CCTCCGAAAG AAGGCGTCAC TGTTGGTTGC 
    TAGCATCAGG AGGTAGTAGA TGCAATGAGG TTGTGGTTTT TCCATCCGAT 
    TCACCTTTTG CTGTACATGG TTATGGTTGT TCTTTCTCTA CATCCAATCT 
    GGGATTCGTT CGTTAAGCAT CGGTTCGAGA GTTGAGGTGT GACCTGTGGG 
    TGTTAATATT GGTGCGAGAT ATACCTGTTA TAGTTGACTG TATGATCTTC 
    CTTTTCTCCC ACTGCTTGGT ATTGATTGGT CAGGCGAATT GTAGAATTTC 
    TTCCACTATT CAATATTACT ACACAGTAAT TTTTCC

    Gene models with high sequence identity

    1. AT5G14790.1 [+] show detail - ARM repeat superfamily protein
      E-value: 1e-91; Score: 334.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 1.9e-17
    HMMPanther CLASP 1.5e-44
    HMMPfam CLASP_N 1.1e-07

    See the detailed result >

    AT5G14790.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G01450.1); Has 322 Blast hits to 322 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 10; Plants - 125; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR