K22307

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22307

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22307

Determination of introduced cDNA(s)

  • J013089C03 - Rice Full-length cDNAs - Original: J013089C03

    full reading [+] show sequence

    Nucleotide sequence: J013089C03 - full reading 
    GACTCGCCAC CACCTCTCCA GCCGAAGCCG CTCACCCTCC TCCGCCTCCC 
    TCCTCCTCTC CCCGTCGCTC GCCATGGCAG CCTTCGCCAC CGCGACCCCC 
    TCGCCGGCGA TCTCCGTGTC CCCCTGGAGC AGTCGTCGCT CCGCGCCGCG 
    CTCCCCTCCC CCACCCGCGC CTCCCCGGCG GGGAAGCTCC GGTCGTCGTT 
    CTCGCCCGCG GCGGCGGCCA CGGCGGCGTC GGTCGGCTGC CTCAGCTCCT 
    TCTCCGGCCT CACCCCCATT TCGCCTCTCC TCTCCCTCGG GGAAGAGACT 
    TCAAGCTTTG AGCATCGATT GTTTGGTATT GATGCCCGTG GAAGGATAGT 
    GGCAATGAGA CATGGGAGGC GTGTTCCTAA ACTTAGCAGA CCTCCAGATC 
    AGCGAAAGGC ACTTCTGCGC GGGCTGACCA CGCAGCTGCT CAAGTACGGA 
    AGGATAAAGA CTACCAGGCC AAGAGCAAAG GCAATGAGGA AGTATGTTGA 
    GAAGATGATC ACACTGGCAA AGGATGGGTC TCTTCACAAG AGGAGGCAGG 
    CTCTGGCTTT TATCTATGAG AAGCATATAG TCCATGCGTT GTTCGCTGAG 
    GTTGCAGACA GGTATGGGGA AAGAGAGGGG GGCTACACAA GGATCATCCC 
    AACATTTCCA AGACGGGGAG ACAATGCACC TATGGCTTAC ATTGAGCTTG 
    TCTAGGAGGC CGTTCATTTG AGCGCGCTGC CTAGGTGGAG GGGTCAAGGG 
    AGTGCCTTTT TGAATATCTG TTTACATATT TTCTTTTGTA ACAAAATGTA 
    GATCATGTGT GAAGTTTTGA ACAGTGGAAT TTCTATCCTG TAACTACGAA 
    AGCATTGTGC TACATTTTGG AAGTGTTCCT GGCACCATAA TCTGGTGCCC 
    TTGAAGTTAT GGATTGTTTT CCAGTCAGTT ACT

    Gene models with high sequence identity

    1. AT3G54210.1 [+] show detail - Ribosomal protein L17 family protein
      E-value: 3e-64; Score: 242.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L17 4.1e-36
    PatternScan Ribosomal protein L17 0
    Gene3D Ribosomal protein L17 8.7e-43
    HMMPanther Ribosomal protein L17 3.2e-58
    superfamily Ribosomal protein L17 2.2e-38
    HAMAP Ribosomal protein L17 26.288
    HMMTigr Ribosomal protein L17 3e-59

    See the detailed result >

    AT3G54210.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L17 family protein
    Computational Description
    Ribosomal protein L17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L17 (InterPro:IPR000456); BEST Arabidopsis thaliana protein match is: Ribosomal protein L17 family protein (TAIR:AT5G09770.1); Has 8019 Blast hits to 8019 proteins in 2737 species: Archae - 0; Bacteria - 5501; Metazoa - 121; Fungi - 128; Plants - 120; Viruses - 0; Other Eukaryotes - 2149 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR