K22314

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22314

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22314

Determination of introduced cDNA(s)

  • J013149D04 - Rice Full-length cDNAs - Original: J013149D04

    full reading [+] show sequence

    Nucleotide sequence: J013149D04 - full reading 
    GTGCGCACGC TAGTGGAGCA GCTGCTGCAG CGGTTGGCCA CCGCCTCCAT 
    CGCCGTCGCC GACTCGCCGC CATCGTCGTT GCCGTCGTCG CCGTCGGCGG 
    AGTAGGCAGG CGGCCATGGC GGGGAAGCAC GGCCGCAACG GCTTCGAGGA 
    CGACGACGTC AATCCCTTCG CGGGAGGAAG TGTTCCTCCT GCCAACAATT 
    CTCGACTCCC ACCTCTCTCC CATGAGCCAG CTGATTTTTA CAATGTGGAC 
    ATTCCTCTTG ACTCGTCTAA GGATTTGAAG AAAAAGGAGA AAGAACTCCA 
    GGCAATGGAA GCTGAACTAA ACAAAAGAGA AAGGGAACTG AAAAGGAAGG 
    AAGAGGCTGC AGCCCAAGCT GGCATTGTCA TTGAAGATAA AAATTGGCCA 
    CCCTTTTTCC CTCTCATTCA CCATAATATT TCAAATGAGA TACCTATTCA 
    TCTACAAAGA ATGCAGTACC TTGCATTTTC ATCGTTTTTG GGATTGGCAG 
    CCTGCCTATT TTGGAATCAT AGCAACCACA ACCGCATGGG TAAAAGGGGA 
    AGGTGTTATT ATCTGGTTGC TTGCTATTAT CTACTTCATA TCTGGTGTAC 
    CTGGTGCTTA TGTGTTATGG TACCGCCCTC TTTATAATGC AATGAGAACT 
    GAGAGTGCTT TGAAGTTTGG GTGGTTTTTT CTGTTTTACC TGATTCATAT 
    AATCTTCTGT GTGTGGGCAG CTGTGGCTCC TCCTTTTCCT TTCAAAGGAA 
    AATCTTTGGC TGGGATTTTG CCTGCCATTG ATGTCATAGG CAGGAGTGCT 
    ATAGTGGGGA TATTTTACTT TGTCGGGTTT GGATTATTCT GCCTTGAGTC 
    ACTGCTGAGC ATTGGTGTCA TTCAGCAAGT ATACATGTAC TTCCGTGGAA 
    GTGGAAAAGC CGCAGAGATG AAACGTGAGG CGGCACGTGG TGCTCTGAGC 
    TCCGCATTCT GATGAAACAT GCCTTGAGCA AAACTGTAGC CAGATGATAT 
    GAGTGGGAGG AAACACGAAA CATGAGTTGC CAATCTAGCA TTCGCATAGT 
    GTACATCCCT GACGGCTGAA CAGCGTGCGG ATTTGGAATC ACCGAAAGCA 
    CCCAGCCATT ATTATCTTTT TTGCTCTTCT GTAATATATA AGCAGCGTTC 
    TTGTATGGAC GCGTTCAGGT GTTTGTTTCC ATTTGTTGAC AAAGATTTTA 
    GATGTGGACG TGTGTTGATA GGGAATAGAC ATACATACGC GTGCGCGAGT 
    GGGATCACCT GTTTTTTATT ACTTCCTTTG CAGCATAGTT GCAGCACGTT 
    GTGTTTATCT GTTGACACGA TTTTCGTGAG TTATAAGATG ATTGATGTCC 
    TCC

    Gene models with high sequence identity

    1. AT1G61250.1 [+] show detail - secretory carrier 3
      E-value: 2e-94; Score: 119.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther SECRETORY CARRIER MEMBRANE PROTEIN 3.5e-69
    HMMPanther SCAMP 3.5e-69
    HMMPanther SECRETORY CARRIER MEMBRANE PROTEIN 1e-98
    HMMPanther SCAMP 1e-98
    HMMPfam SCAMP 3.4e-11
    HMMPfam SCAMP 7.9e-36

    See the detailed result >

    AT1G61250.1

    Model type
    Protein coding
    Short Description
    secretory carrier 3
    Curator Summary
    Encodes a putative secretory carrier membrane protein (SC3).
    Computational Description
    secretory carrier 3 (SC3); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT1G11180.1); Has 696 Blast hits to 694 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 383; Fungi - 14; Plants - 228; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR