K22314

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22314

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22314

Determination of introduced cDNA(s)

  • J013149D04 - Rice Full-length cDNAs - Original: J013149D04

    full reading [+] show sequence

    Nucleotide sequence: J013149D04 - full reading
    GTGCGCACGC TAGTGGAGCA GCTGCTGCAG CGGTTGGCCA CCGCCTCCAT 
    CGCCGTCGCC GACTCGCCGC CATCGTCGTT GCCGTCGTCG CCGTCGGCGG
    AGTAGGCAGG CGGCCATGGC GGGGAAGCAC GGCCGCAACG GCTTCGAGGA
    CGACGACGTC AATCCCTTCG CGGGAGGAAG TGTTCCTCCT GCCAACAATT
    CTCGACTCCC ACCTCTCTCC CATGAGCCAG CTGATTTTTA CAATGTGGAC
    ATTCCTCTTG ACTCGTCTAA GGATTTGAAG AAAAAGGAGA AAGAACTCCA
    GGCAATGGAA GCTGAACTAA ACAAAAGAGA AAGGGAACTG AAAAGGAAGG
    AAGAGGCTGC AGCCCAAGCT GGCATTGTCA TTGAAGATAA AAATTGGCCA
    CCCTTTTTCC CTCTCATTCA CCATAATATT TCAAATGAGA TACCTATTCA
    TCTACAAAGA ATGCAGTACC TTGCATTTTC ATCGTTTTTG GGATTGGCAG
    CCTGCCTATT TTGGAATCAT AGCAACCACA ACCGCATGGG TAAAAGGGGA
    AGGTGTTATT ATCTGGTTGC TTGCTATTAT CTACTTCATA TCTGGTGTAC
    CTGGTGCTTA TGTGTTATGG TACCGCCCTC TTTATAATGC AATGAGAACT
    GAGAGTGCTT TGAAGTTTGG GTGGTTTTTT CTGTTTTACC TGATTCATAT
    AATCTTCTGT GTGTGGGCAG CTGTGGCTCC TCCTTTTCCT TTCAAAGGAA
    AATCTTTGGC TGGGATTTTG CCTGCCATTG ATGTCATAGG CAGGAGTGCT
    ATAGTGGGGA TATTTTACTT TGTCGGGTTT GGATTATTCT GCCTTGAGTC
    ACTGCTGAGC ATTGGTGTCA TTCAGCAAGT ATACATGTAC TTCCGTGGAA
    GTGGAAAAGC CGCAGAGATG AAACGTGAGG CGGCACGTGG TGCTCTGAGC
    TCCGCATTCT GATGAAACAT GCCTTGAGCA AAACTGTAGC CAGATGATAT
    GAGTGGGAGG AAACACGAAA CATGAGTTGC CAATCTAGCA TTCGCATAGT
    GTACATCCCT GACGGCTGAA CAGCGTGCGG ATTTGGAATC ACCGAAAGCA
    CCCAGCCATT ATTATCTTTT TTGCTCTTCT GTAATATATA AGCAGCGTTC
    TTGTATGGAC GCGTTCAGGT GTTTGTTTCC ATTTGTTGAC AAAGATTTTA
    GATGTGGACG TGTGTTGATA GGGAATAGAC ATACATACGC GTGCGCGAGT
    GGGATCACCT GTTTTTTATT ACTTCCTTTG CAGCATAGTT GCAGCACGTT
    GTGTTTATCT GTTGACACGA TTTTCGTGAG TTATAAGATG ATTGATGTCC
    TCC

    Gene models with high sequence identity

    1. AT1G61250.1 [+] show detail - secretory carrier 3
      E-value: 2e-94; Score: 119.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther SECRETORY CARRIER MEMBRANE PROTEIN 3.5e-69
    HMMPanther SCAMP 3.5e-69
    HMMPanther SECRETORY CARRIER MEMBRANE PROTEIN 1e-98
    HMMPanther SCAMP 1e-98
    HMMPfam SCAMP 3.4e-11
    HMMPfam SCAMP 7.9e-36

    See the detailed result >

    AT1G61250.1

    Model type
    Protein coding
    Short Description
    secretory carrier 3
    Curator Summary
    Encodes a putative secretory carrier membrane protein (SC3).
    Computational Description
    secretory carrier 3 (SC3); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT1G11180.1); Has 696 Blast hits to 694 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 383; Fungi - 14; Plants - 228; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR