K22315

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22315

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22315

Determination of introduced cDNA(s)

  • J013002B17 - Rice Full-length cDNAs - Original: J013002B17

    full reading [+] show sequence

    Nucleotide sequence: J013002B17 - full reading 
    GACAAGTTGG CCAAGATCAC CAATAAGGAT TTGCCTATCC TTCTCTGGCG 
    CTCCTGAATC CTCTTAGATG GTTATACCTT GGTGTTCGTC CATGATGCGG 
    CTTTTGTGGT TCTTGTTCGC GCTTCTTCTT GCCAGATCGG TGGCAGATGC 
    TGCAACTGCG AACTACACTT TCACTGTGGA AAGCATGCGA GTCAGTCGGC 
    TATGCAACAG CACTGACATT ATTGCGGTGA ACGGCCTACT GCCAGGCCCA 
    ATGATAGAAG TGAATGAAGG TGACGCAGTT GCTGTCGAGG TCATCAACGG 
    ATCACCATAT AACTTAACCA TACACTGGCA TGGCATACTC CAGCTACTGA 
    CGCCATGGGC GGACGGCCCG AGCATGGTCA CGCAGTGCCC TATCCAGCCG 
    AACAGCTCGT ACACGTACAG GTTCAACGTC ACCGGACAAG AAGGCACGCT 
    GTGGTGGCAC GCCCACTCCT CCTTCCTGCG CGCCACCGTG TACGGCGCTC 
    TCATCATCCG GCCAAGAAAC GGCTCCGCCT ATCCCTTCCC CGCGCCGGAC 
    CAAGAGGTCC CCATCGTGCT TGGGGAATGG TGGAGCCGGA ATGTCGTCGA 
    CATCGAGAGC GACGCCGTCT CATCTGGCCA GCTTCCCAGA GAATCCGACG 
    CGTTCACCGT TAATGGTGTT ACCGGCGAGC TCTACCAATG CGCAAATGAC 
    ACGTTCACGG TGGACGTGCA GCCCAACACG ACGGTGCTAC TCCGGGTCAT 
    CAACGCTGGA CTCAACACGC ACCTCTTCTT CAAGGTGGCC GGCCACGCGT 
    TCACCGTCGT GGCCGTCGAC GCGTGCTACA CCGCCAACTA CACCACGGAC 
    ACGCTCGTGC TCGCGCCGGG GCACACCGTG GACGCGCTCA TGGTCACCAA 
    CGCGTCGGCC GGCAGCTACT ACATGGCGGT GCAGGCGTAC GACAGCCTGT 
    CTCCGACCAC CATGGCCGTA ACCGACGACA CCACCGCCAC GGCCATCGTG 
    CACTACAACA CCACGTCGAC CAAGAAAAAC GCGACGCCCG TCATGCCCAC 
    CATGCCCCAG AGCTCCGACT CCGCGACGGC CAACGCCTTC TACTTCGGGC 
    TGAGGGGCCC GCCGTCTCCC AGCGCGCCGG CCGTGCCGAC CAAGGTGGAC 
    GTGAACATGA CCATCGAGCT GGGCCTCGGC CAGCTGCCGT GCGACTCCAC 
    ACAGAGCAGC TGCTCGGGGA AATCCGTCGC GGCGGCGATG AACGGCGTGT 
    CGTTCCGCCT CCCGTCGCAG ATGTCCCTCC TGGAGGCGCA GTTCAACCGC 
    ACGCCGGGGG TGTACACCGC CGACTTCCCG GACGCCCCGC AGCCGAGCGG 
    CACGCCGATG GTCGAGGGGA CCAAGGTGCG GAGGCTCAAG TACAACTCGA 
    CGGTGGAGAT CGTGCTGCAG AACCCGACCG CCTTCCCGTC GGAGAACCAC 
    CCGATCCACC TCCACGGCTT CAACTTCTTC GTGCTGGCCC AGGGCCTCGG 
    CAACTTCACG CCGGGCAACG TGAGCGGCTA CAACCTCGTC GACCCGGTTT 
    CGCGCAACAC CCTCGCCGTG CCGACCGGCG GCTGGGCCGT CATCCGTTTC 
    GTTGCCAACA ATCCAGGCAT GTGGTTCTTC CATTGCCACC TTGACGCGCA 
    CGTTCCGATG GGGCTCGGCA TGGTGTTCGC GGTGGATAAC GGGACGACGC 
    CTGACTCCTT CCTCCCTCCG CCGCCTGCCG ATCTGCCGAT CTGCCGAAGT 
    GCTAGAACCT GCAAGATTCT GGCGTTGGTG TCAAATTGTA ATGCACTTTC 
    GTAGCCAAAT TTTACTTCAT ATTTGTTCTT GTGTTTGTGT AAATGGAGTA 
    CAGGAGGCAC GAAACGAGGT AGTGCCGTTC GTTTATTTGT TCTGTGTATG 
    TGTATCATGT GTAAACTGTA AAGAGGTCTG TTTTTTTTTT TCCTCTCCGG 
    GGGAACGTGT AAACTGTAAA GCAACAAATG TCAAACTTCA GATTCC

    Gene models with high sequence identity

    1. AT3G09220.1 [+] show detail - laccase 7
      E-value: 1e-159; Score: 560.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Multicopper oxidase, type 3 5.6e-42
    HMMPfam Multicopper oxidase, type 2 1.7e-38
    HMMPfam Multicopper oxidase, type 1 1.4e-33
    HMMPanther LACCASE 2.9e-237
    HMMPanther MULTI-COPPER OXIDASE 2.9e-237
    superfamily Cupredoxin 2.9e-45
    superfamily Cupredoxin 4.3e-45
    superfamily Cupredoxin 8.3e-42
    HMMTigr Laccase 1.8e-236
    PatternScan Multicopper oxidase, copper-binding site 0
    PatternScan Multicopper oxidase, copper-binding site 0
    Gene3D Cupredoxin 5.3e-42
    Gene3D Cupredoxin 6e-40
    Gene3D Cupredoxin 1.7e-53

    See the detailed result >

    AT3G09220.1

    Model type
    Protein coding
    Short Description
    laccase 7
    Curator Summary
    putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
    Computational Description
    laccase 7 (LAC7); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT5G01050.1); Has 10354 Blast hits to 8703 proteins in 1520 species: Archae - 53; Bacteria - 4205; Metazoa - 505; Fungi - 3603; Plants - 1597; Viruses - 0; Other Eukaryotes - 391 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR