K22326

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) desaturated green (PATO:0001272) (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22326

Determination of introduced cDNA(s)

J033063N13 - Rice Full-length cDNAs - Original: J033063N13

full reading [+] show sequence

TATGGATGGG TTATTGGCAG CATGGGAGTT GCACTTGCTT TGATTGCTAT 
TGCTCTCCTT GCACTTGTTC TGTGCAAGCT CTCCCAATAC AATCCCCAAG 
CTCCAAATAA CCAGGGAAAG AGCCCAGACC AGTCTATATC ACACAAGTTT 
CAACTTCTTA AGAGTGGTAG TTTTTGTTAT GGTTCTGGAA GATACTTATG 
TTGCCAATTT GGAAATGTGA AACAATCAAG AACGGATGGC AGTGATCATC 
ATATGAATAC CCCAAAAGGT GTTGTAGTGG ACGTGTTTGA TAGGGAGAAG 
CCCATTGTGT TTACCTATCA AGAAATACTT GCATCAACCG ATTCATTTTC 
TGATGCAAAT CTTCTGGGTC ATGGTACATA TGGCTCTGTT TATTATGGTG 
TTCTTCGAGA CCAGGAGGTC GCTATAAAGA GAATGACAGC AACTAAAACT 
AAAGAGTTTA TAGTGGAGAT GAAAGTTCTT TGTAAGGTCC ATCATGCCAG 
TCTGGTAGAG TTGATTGGCT ATGCAGCAAG CAAGGATGAA CTATACCTTA 
TTTACGAGTA CTCTCAAAAA GGTTCACTCA AGAATCACCT TCATGATCCT 
CAAAGCAAAG GTTACACATC ATTGTCTTGG ATCTACAGGG TCCAAATTGC 
TCTTGATGCG GCTAGAGGAC TTGAATACAT TCATGAGCAT ACAAAGGATC 
ATTATGTTCA CAGGGACATC AAATCGAGTA ACATCTTGCT CGATGAATCC 
TTCAGAGCAA AGATTTCAGA TTTTGGTCTT GCAAAACTGG TAGTGAAGTC 
AACTGATGCA GAGGCTTCTG TCACAAAAGT TGTGGGTACA TTTGGTTACT 
TGGCCCCTGA ATACTTGCGC GATGGCCTGG CAACTACGAA AAATGATGTT 
TATGCTTTTG GAGTAGTACT TTTTGAGTTA ATATCTGGAA AGGAGGCAAT 
TACAAGGACT GATGGATTGA ACGAAGGATC AAACTCAGAA AGGCGTTCCT 
TGGCATCAGT TATGTTGAGT GCACTAAAGA ATTGTCGTAA CTCAATGTAT 
ATGGGGAGCC TGAAAGACTG CATTGACCCT AATCTAATGG ACCTGTATCC 
ACATGACTGT GTATACAAGA TGGCCATGCT AGCGAAACAG TGCGTGGAGG 
AAGATCCTGT TCTTCGGCCA GACATGAAGC AGGCAGTAAT CGCGCTATCG 
CAAATACTGC TGTCGTCGAT CGAGTGGGAA GCGACGCTAG CTGGGAACAG 
CCAAGTGTTC AGTGGTCTTG TGGCTGGGAG GTGATCCTGT AAGATTGGCC 
TGGTTGCTAC GGTGCTATCC CATGCGCTCT TCGGTGATCT CCTTCCCTGC 
TCCACTAGAG GCGTTTTCCC CTGTAACCTT CTCCTGCATT TTGCTGGTTT 
CTTGCCCAGT TGAGCAGTTT TCTGCATCTT CTTTTCAAAG TATCTACCAC 
AGTGCAATAT ATTTCTTGGT GGGTGATATG TAACCATGTA TGTATACCAA 
ATGTGCCTTG CAAGTTCTAA TGCAATGATC TTGCACC

Gene models with high sequence identity

AT1G51940.1 [+] show detail - protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
E-value: 4e-157; Score: 551.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	RECEPTOR PROTEIN KINASE-RELATED	2.5e-183
HMMPanther	SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE	2.5e-183
PatternScan	Protein kinase, ATP binding site	0
PatternScan	Serine/threonine-protein kinase, active site	0
ProfileScan	Protein kinase, catalytic domain	39.778
HMMSmart	Serine/threonine-protein kinase domain	9.5e-36
HMMSmart	Tyrosine-protein kinase, catalytic domain	7.6e-41
superfamily	Protein kinase-like domain	6.1e-76
Gene3D	no description	1.1e-18
Gene3D	no description	6.6e-49
HMMPfam	Serine-threonine/tyrosine-protein kinase	2.7e-48

See the detailed result >

AT1G51940.1

Model type: Protein coding
Short Description: protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
Computational Description: protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: chitin elicitor receptor kinase 1 (TAIR:AT3G21630.1); Has 117626 Blast hits to 116415 proteins in 4493 species: Archae - 110; Bacteria - 13527; Metazoa - 43649; Fungi - 10139; Plants - 32288; Viruses - 471; Other Eukaryotes - 17442 (source: NCBI BLink).
Link: InterPro Scan - TAIR