K22334

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22334

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22334

Determination of introduced cDNA(s)

  • J023018C07 - Rice Full-length cDNAs - Original: J023018C07

    full reading [+] show sequence

    Nucleotide sequence: J023018C07 - full reading 
    GGCAATTCCC CTCCTCCGCC TCCCCTAGTT TCCTCTCCTC CCCGAAACCC 
    CCAATTCGAA TCCGGCGGCG AATTCGATTG GGGATTTCGG CGTCCTCGCC 
    TCCGTGGGAT TCCTCGGATC CCGCCTCGGC TTCCCGTCTC GATCTGCGTC 
    TGGAGTTTTG GAGCAGACGA TTTGAGTTTC TGGTTCGATT TGGTTTGGTT 
    TGGTTTGGGG GCGATTTGGT TCAAGGCGCG GATGGCGTCT TCTCCGGTGT 
    CGTACTGGTG CTACCACTGC AGCCGCTTCG TGAGGGTGTC GCCGTCCACG 
    GTCGTCTGCC CGGAGTGCGA CGGCGGCTTC CTGGAGCAGT TCCCGCAGCC 
    GCCGCCGCGC GGCGGCGGCG GGAGCGGCCG GCGCGGGGCG ATGAACCCGG 
    TGATCGTGCT CCGGGGAGGG TCCCTGTCCG GGTTCGAGCT CTACTACGAC 
    GACGGCTCCG GCGACGGGCT GCGGCCGCTG CCCGGCGACG TGTCGCACCT 
    CCTCATGGGG TCGGGCTTCC ACCGCCTGCT CGACCAGTTC TCCCGGCTCG 
    AGGCGGCGGC GCCGCGGCCG CCGGCGTCGA AGGCGGCGGT GGAGTCGATG 
    CCGTCGGTGA CGGTTGCCGG GAGCGGGGCG CACTGCGCGG TGTGCCAGGA 
    GGCGTTCGAG CCGGGCGCCT CCGCGCGGGA GATGCCGTGC AAGCACGTCT 
    ACCACCAGGA CTGCATCCTG CCCTGGCTCT CCCTCCGCAA CTCATGCCCC 
    GTCTGCCGCC GCGAGCTACC GGCGGCCGCG GCCCCCGAGT CGGAGGCAGA 
    TGCGGGACTA ACCATCTGGC GACTCCCACG CGGTGGATTC GCCGTCGGGA 
    GGTTCGCCGG TGGGCCAAGG GAGCAGCTTC CGGTTGCCTA CACTGAACTG 
    GATGGGGGCT TCAGTAACGG CGTCGGGCCG AGGCGGGTAA CGTGGCCGGA 
    GGGCGACGGC CATGTCGATG GCGGCGAAGG TCGGATTCGC CGTGTATTTA 
    GGAATCTGTT TGGTTGTTTT GGTCGGAGCA GTCGGCCGGA GAGTTCATCA 
    TCGCAGTCCC GTAGTGGCTG AACGCAGTTT TCTCGGTAAC TCGATCTCCT 
    ATTGATAGTG GTGAATAAGT AGGATTTAGT ATAAGAAGGG AACCCAGATT 
    ATAAGTTCTT GGGACTTTTG ATGTAAATGA AAACCTTGCG ATTTTTTTCC 
    ACTTTGTCCC GTTTTAAGAG TTTATTTAGA GATGGCCACG AGCAAAATAG 
    CAAACAACTG GAAATTAGTT TGGAAAGCAA ATTAGGAGGA AGAAGCACAG 
    GACTTCATGA AAGGAATGAC AGTGAATTTA TTGGGTAAAT CAATTGTTGC 
    AATGTTGTAG TCAGAGAGAA CAAAGTGTTG TTCTTACCTC TGTACTGTTT 
    GTGTATATAC TGGATTGGGC CAAGAAGATT TCTGATTTGC

    Gene models with high sequence identity

    1. AT5G59550.1 [+] show detail - zinc finger (C3HC4-type RING finger) family protein
      E-value: 1e-50; Score: 197.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RING ZINC FINGER PROTEIN 3.1e-35
    HMMSmart Zinc finger, RING-type 8.3e-08
    Gene3D no description 1.7e-13
    ProfileScan Zinc finger, RING-type 12.46
    Coil coiled-coil 0
    HMMPfam Protein of unknown function DUF1117 9e-29
    HMMPfam Zinc finger, C3HC4 RING-type 4e-07
    superfamily RING/U-box 7.3e-16

    See the detailed result >

    AT5G59550.1

    Model type
    Protein coding
    Short Description
    zinc finger (C3HC4-type RING finger) family protein
    Computational Description
    zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR