K22334

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22334

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22334

Determination of introduced cDNA(s)

  • J023018C07 - Rice Full-length cDNAs - Original: J023018C07

    full reading [+] show sequence

    Nucleotide sequence: J023018C07 - full reading
    GGCAATTCCC CTCCTCCGCC TCCCCTAGTT TCCTCTCCTC CCCGAAACCC 
    CCAATTCGAA TCCGGCGGCG AATTCGATTG GGGATTTCGG CGTCCTCGCC
    TCCGTGGGAT TCCTCGGATC CCGCCTCGGC TTCCCGTCTC GATCTGCGTC
    TGGAGTTTTG GAGCAGACGA TTTGAGTTTC TGGTTCGATT TGGTTTGGTT
    TGGTTTGGGG GCGATTTGGT TCAAGGCGCG GATGGCGTCT TCTCCGGTGT
    CGTACTGGTG CTACCACTGC AGCCGCTTCG TGAGGGTGTC GCCGTCCACG
    GTCGTCTGCC CGGAGTGCGA CGGCGGCTTC CTGGAGCAGT TCCCGCAGCC
    GCCGCCGCGC GGCGGCGGCG GGAGCGGCCG GCGCGGGGCG ATGAACCCGG
    TGATCGTGCT CCGGGGAGGG TCCCTGTCCG GGTTCGAGCT CTACTACGAC
    GACGGCTCCG GCGACGGGCT GCGGCCGCTG CCCGGCGACG TGTCGCACCT
    CCTCATGGGG TCGGGCTTCC ACCGCCTGCT CGACCAGTTC TCCCGGCTCG
    AGGCGGCGGC GCCGCGGCCG CCGGCGTCGA AGGCGGCGGT GGAGTCGATG
    CCGTCGGTGA CGGTTGCCGG GAGCGGGGCG CACTGCGCGG TGTGCCAGGA
    GGCGTTCGAG CCGGGCGCCT CCGCGCGGGA GATGCCGTGC AAGCACGTCT
    ACCACCAGGA CTGCATCCTG CCCTGGCTCT CCCTCCGCAA CTCATGCCCC
    GTCTGCCGCC GCGAGCTACC GGCGGCCGCG GCCCCCGAGT CGGAGGCAGA
    TGCGGGACTA ACCATCTGGC GACTCCCACG CGGTGGATTC GCCGTCGGGA
    GGTTCGCCGG TGGGCCAAGG GAGCAGCTTC CGGTTGCCTA CACTGAACTG
    GATGGGGGCT TCAGTAACGG CGTCGGGCCG AGGCGGGTAA CGTGGCCGGA
    GGGCGACGGC CATGTCGATG GCGGCGAAGG TCGGATTCGC CGTGTATTTA
    GGAATCTGTT TGGTTGTTTT GGTCGGAGCA GTCGGCCGGA GAGTTCATCA
    TCGCAGTCCC GTAGTGGCTG AACGCAGTTT TCTCGGTAAC TCGATCTCCT
    ATTGATAGTG GTGAATAAGT AGGATTTAGT ATAAGAAGGG AACCCAGATT
    ATAAGTTCTT GGGACTTTTG ATGTAAATGA AAACCTTGCG ATTTTTTTCC
    ACTTTGTCCC GTTTTAAGAG TTTATTTAGA GATGGCCACG AGCAAAATAG
    CAAACAACTG GAAATTAGTT TGGAAAGCAA ATTAGGAGGA AGAAGCACAG
    GACTTCATGA AAGGAATGAC AGTGAATTTA TTGGGTAAAT CAATTGTTGC
    AATGTTGTAG TCAGAGAGAA CAAAGTGTTG TTCTTACCTC TGTACTGTTT
    GTGTATATAC TGGATTGGGC CAAGAAGATT TCTGATTTGC

    Gene models with high sequence identity

    1. AT5G59550.1 [+] show detail - zinc finger (C3HC4-type RING finger) family protein
      E-value: 1e-50; Score: 197.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RING ZINC FINGER PROTEIN 3.1e-35
    HMMSmart Zinc finger, RING-type 8.3e-08
    Gene3D no description 1.7e-13
    ProfileScan Zinc finger, RING-type 12.46
    Coil coiled-coil 0
    HMMPfam Protein of unknown function DUF1117 9e-29
    HMMPfam Zinc finger, C3HC4 RING-type 4e-07
    superfamily RING/U-box 7.3e-16

    See the detailed result >

    AT5G59550.1

    Model type
    Protein coding
    Short Description
    zinc finger (C3HC4-type RING finger) family protein
    Computational Description
    zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR